nf-msbasic/nextflow_schema.json at master · thinkle12/nf-msbasic · GitHub

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{
  "$schema": "http://json-schema.org/draft-07/schema",
  "$id": "https://raw.githubusercontent.com//master/nextflow_schema.json",
  "title": " pipeline parameters",
  "description": "",
  "type": "object",
  "properties": {
    "files": {
      "type": "string",
      "description": "mzML or raw files to analyze"
    },
    "msfragger_parameters": {
      "type": "string",
      "description": "The MSFragger parameter file"
    },
    "database": {
      "type": "string",
      "description": "The fasta database with target and decoy proteins"
    },
    "publishDir": {
      "type": "string",
      "default": "output",
      "description": "The path where output data should be written to"
    },
    "publishMode": {
      "type": "string",
      "default": "link"
    }
  },
  "required": ["files", "msfragger_parameters", "database"]
}