Bioinformatic Engineer · Back-End Developer · Biotechnologist

Indonesia 🇮🇩 · Building production health & environmental data systems · Open to research collaboration

I work at the intersection of bioinformatics, software engineering, and applied biology — building production systems that turn biological data into decisions. My current focus areas:

• 🧬 Precision genomics & nutrition — polygenic risk score pipelines, GWAS analysis, genomic testing APIs
• 🏥 Health information systems — multi-tenant electronic medical record platforms with international medical coding standards (ICD-10, LOINC, KFA)
• 🌿 Microalgae bioinformatics & sustainability — strain characterisation, growth kinetics modelling, IoT-based monitoring systems
• 🤖 Machine learning for biology — applying ML methods to biological signal extraction and prediction

I am a bioinformatic engineer at Regene Genomics and a graduate (Cum Laude, GPA 3.86) of the Undergraduate Program in Biology at Universitas Gadjah Mada.

• microalgae_growth_kinetics_model — Python implementation of kinetic models (Monod, Logistic, Gompertz) for microalgae growth. Used in my undergraduate thesis on Euglena sp. from wastewater treatment plants.
• kinetic_modeling_of_LIRA-toehold-switch_expression_system_EcN — In silico modelling of LIRA (Loop-Initiated RNA Activator) toehold-switch response to miRNA biomarkers, developed as part of iGEM 2023.

• iGEM-UGM-2023-drylab — Computational lab documentation for ColDBlu, a colorectal cancer screening biodevice. 🥇 Gold Medal, Top 5 Best Diagnostic Project, iGEM 2023 Paris.

• Languages Python · Go (Gin / Fiber) · Bash · R
• Bioinformatics PLINK · PRSice-2 · LDpred-2 · Lassosum · NUPACK · Benchling · GATK
• Data & ML TensorFlow · Scikit-learn · Pandas · NumPy · Streamlit
• Infrastructure Docker · Drone CI · Docker Swarm · MongoDB · MySQL · Flask · REST API
• Health Data Standards ICD-10 · ICD-9-CM · LOINC · KFA (Satu Sehat / Kemenkes)
• Lab DNA isolation & electrophoresis · PCR · Microalgae cultivation and characterisation

• 🥇 GOGEC 2024 — Gold Medal · Best Computational Project · Best Human-Centred Design
• 🥇 iGEM 2023 Paris — Gold Medal · Top 5 Best Diagnostic Project · Inclusivity Award
• 🥇 BIOS 2022 — Gold Medal · Top 3 Best Elevator Pitch
• 📚 Cargill Global Scholar — one of 10 national awardees (2022–2024)
• 🎓 Bangkit Academy ML Path graduate (Google, Gojek, Tokopedia, Traveloka)

• Characterization of Lipids, Pigments, and Growth Kinetics of Euglena sp. Isolated from Sewage and Rice Field — Malaysian Journal of Microbiology (2024, under review)
• Effect of Red and Blue Light on Lipid, Protein, Carbohydrate, and Pigment Contents of Navicula sp. — Makara Journal of Science (2023, published)

I am working towards building rigorous bioinformatics infrastructure for Indonesian biodiversity — systems that can validate, characterise, and translate the country's megabiodiversity into health and environmental solutions. This spans microalgae as a sustainable bioplatform (food, fuel, carbon capture), precision health for underrepresented populations, and environmental monitoring through distributed sensor systems.

• ✉️ maulanasofyan0712@gmail.com
• 💼 LinkedIn: Sofyan Maulana
• 🌐 Based in Indonesia · Open to research collaboration & graduate study opportunities