diff --git a/.github/workflows/publish_docs.yml b/.github/workflows/publish_docs.yml
deleted file mode 100644
index 88833dd..0000000
--- a/.github/workflows/publish_docs.yml
+++ /dev/null
@@ -1,44 +0,0 @@
-name: Deploy docs to GitHub Pages
-
-on:
-  push:
-    branches: ["devel"]
-  workflow_dispatch:
-
-permissions:
-  contents: read
-  pages: write
-  id-token: write
-
-concurrency:
-  group: "pages"
-  cancel-in-progress: false
-
-jobs:
-  build-and-deploy:
-    runs-on: ubuntu-latest
-    environment:
-      name: github-pages
-      url: ${{ steps.deployment.outputs.page_url }}
-
-    steps:
-      - name: Checkout
-        uses: actions/checkout@v4
-
-      - name: Build documentation
-        uses: ./.github/actions/build-docs
-        with:
-          python-version: "3.10"
-          treat-warnings-as-errors: "false"
-
-      - name: Setup Pages
-        uses: actions/configure-pages@v5
-
-      - name: Upload built docs
-        uses: actions/upload-pages-artifact@v3
-        with:
-          path: docs/build/html/
-
-      - name: Deploy to GitHub Pages
-        id: deployment
-        uses: actions/deploy-pages@v4
diff --git a/.github/workflows/publish_pypi.yml b/.github/workflows/publish_pypi.yml
index cf03ba3..985aeef 100644
--- a/.github/workflows/publish_pypi.yml
+++ b/.github/workflows/publish_pypi.yml
@@ -10,7 +10,7 @@ jobs:
     runs-on: ubuntu-latest
     environment:
       name: pypi
-      url: https://pypi.org/project/template-python/
+      url: https://pypi.org/project/plasma-simulation/
     permissions:
       id-token: write
       contents: read
diff --git a/.github/workflows/test_docs.yml b/.github/workflows/test_docs.yml
deleted file mode 100644
index dce6436..0000000
--- a/.github/workflows/test_docs.yml
+++ /dev/null
@@ -1,36 +0,0 @@
-name: Test Documentation Build
-
-on:
-  push:
-    branches:
-      - main
-      - devel
-  pull_request:
-    branches:
-      - main
-      - devel
-
-defaults:
-  run:
-    shell: bash
-
-jobs:
-  test-docs:
-    runs-on: ubuntu-latest
-    steps:
-      - name: Checkout
-        uses: actions/checkout@v4
-
-      - name: Build documentation
-        uses: ./.github/actions/build-docs
-        with:
-          python-version: "3.10"
-          treat-warnings-as-errors: "true"
-
-      - name: Upload docs artifact
-        uses: actions/upload-artifact@v4
-        if: always()
-        with:
-          name: documentation
-          path: docs/build/html/
-          retention-days: 7
diff --git a/.github/workflows/test_setup_script.yml b/.github/workflows/test_setup_script.yml
deleted file mode 100644
index c1e9e4c..0000000
--- a/.github/workflows/test_setup_script.yml
+++ /dev/null
@@ -1,67 +0,0 @@
-name: Test Setup Script
-
-on:
-  push:
-    branches:
-      - main
-      - devel
-  pull_request:
-    branches:
-      - main
-      - devel
-
-defaults:
-  run:
-    shell: bash
-
-jobs:
-  test-setup-script:
-    runs-on: ubuntu-latest
-    steps:
-      - name: Checkout code
-        uses: actions/checkout@v4
-
-      - name: Set up Python
-        uses: actions/setup-python@v5
-        with:
-          python-version: "3.10"
-
-      - name: Run setup script
-        run: |
-          bash setup_project.sh my-test-app
-
-      - name: Verify changes
-        run: |
-          # Check that src/app was moved to src/my_test_app
-          if [ ! -d "src/my_test_app" ]; then
-            echo "Error: src/my_test_app does not exist"
-            exit 1
-          fi
-
-          # Check that src/app no longer exists
-          if [ -d "src/app" ]; then
-            echo "Error: src/app still exists"
-            exit 1
-          fi
-
-          # Check that template-python was replaced in pyproject.toml
-          if grep -q "template-python" pyproject.toml; then
-            echo "Error: 'template-python' still found in pyproject.toml"
-            exit 1
-          fi
-
-          if ! grep -q "my-test-app" pyproject.toml; then
-            echo "Error: 'my-test-app' not found in pyproject.toml"
-            exit 1
-          fi
-
-          echo "✓ All checks passed!"
-
-      - name: Install project with new name
-        run: |
-          pip install --upgrade pip
-          pip install -e .
-
-      - name: Test renamed command works
-        run: |
-          my-test-app
diff --git a/.github/workflows/test_tutorials.yml b/.github/workflows/test_tutorials.yml
deleted file mode 100644
index 58a7e81..0000000
--- a/.github/workflows/test_tutorials.yml
+++ /dev/null
@@ -1,46 +0,0 @@
-name: Test Tutorials
-
-on:
-  push:
-    branches:
-      - main
-      - devel
-  pull_request:
-    branches:
-      - main
-      - devel
-
-jobs:
-  tutorials:
-    runs-on: ubuntu-latest
-
-    steps:
-      - name: Checkout code
-        uses: actions/checkout@v4
-
-      - name: Set up Python
-        uses: actions/setup-python@v5
-        with:
-          python-version: "3.10"
-
-      - name: Cache pip
-        uses: actions/cache@v4
-        with:
-          path: ~/.cache/pip
-          key: ${{ runner.os }}-pip-${{ hashFiles('**/pyproject.toml') }}
-          restore-keys: |
-            ${{ runner.os }}-pip-
-
-      - name: Install dependencies
-        run: |
-          sudo apt-get update
-          sudo apt-get install -y pandoc
-
-      - name: Install project
-        run: |
-          pip install --upgrade pip
-          pip install ".[dev]"
-
-      - name: Execute tutorials
-        run: |
-          jupyter nbconvert --to notebook --execute tutorials/*.ipynb --output-dir=/tmp --ExecutePreprocessor.timeout=300
diff --git a/README.md b/README.md
index 8f49086..8a6ad0c 100644
--- a/README.md
+++ b/README.md
@@ -1,8 +1,8 @@
-# template-python
+# plasma-simulation
 
 Template repository for python projects
 
-Documentation: https://max-models.github.io/template-python/
+Documentation: https://max-models.github.io/plasma-simulation/
 
 # Install
 
@@ -23,7 +23,7 @@ pip install -e .
 Run the code with
 
 ```
-template-python
+plasma-simulation
 ```
 
 # Build docs
@@ -50,9 +50,9 @@ This project is configured to automatically publish to PyPI using GitHub Actions
 1. Go to your PyPI project settings
 2. Navigate to "Publishing" → "Add a new publisher"
 3. Configure the trusted publisher with these details:
-   - **PyPI Project Name**: `template-python` (or your project name)
+   - **PyPI Project Name**: `plasma-simulation` (or your project name)
    - **Owner**: Your GitHub username/organization
-   - **Repository name**: `template-python`
+   - **Repository name**: `plasma-simulation`
    - **Workflow name**: `publish_pypi.yml`
    - **Environment name**: `pypi`
 
diff --git a/docs/Makefile b/docs/Makefile
deleted file mode 100644
index d0c3cbf..0000000
--- a/docs/Makefile
+++ /dev/null
@@ -1,20 +0,0 @@
-# Minimal makefile for Sphinx documentation
-#
-
-# You can set these variables from the command line, and also
-# from the environment for the first two.
-SPHINXOPTS    ?=
-SPHINXBUILD   ?= sphinx-build
-SOURCEDIR     = source
-BUILDDIR      = build
-
-# Put it first so that "make" without argument is like "make help".
-help:
-	@$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
-
-.PHONY: help Makefile
-
-# Catch-all target: route all unknown targets to Sphinx using the new
-# "make mode" option.  $(O) is meant as a shortcut for $(SPHINXOPTS).
-%: Makefile
-	@$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
diff --git a/docs/make.bat b/docs/make.bat
deleted file mode 100644
index 747ffb7..0000000
--- a/docs/make.bat
+++ /dev/null
@@ -1,35 +0,0 @@
-@ECHO OFF
-
-pushd %~dp0
-
-REM Command file for Sphinx documentation
-
-if "%SPHINXBUILD%" == "" (
-	set SPHINXBUILD=sphinx-build
-)
-set SOURCEDIR=source
-set BUILDDIR=build
-
-%SPHINXBUILD% >NUL 2>NUL
-if errorlevel 9009 (
-	echo.
-	echo.The 'sphinx-build' command was not found. Make sure you have Sphinx
-	echo.installed, then set the SPHINXBUILD environment variable to point
-	echo.to the full path of the 'sphinx-build' executable. Alternatively you
-	echo.may add the Sphinx directory to PATH.
-	echo.
-	echo.If you don't have Sphinx installed, grab it from
-	echo.https://www.sphinx-doc.org/
-	exit /b 1
-)
-
-if "%1" == "" goto help
-
-%SPHINXBUILD% -M %1 %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O%
-goto end
-
-:help
-%SPHINXBUILD% -M help %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O%
-
-:end
-popd
diff --git a/docs/source/_static/custom.css b/docs/source/_static/custom.css
deleted file mode 100644
index fb0ac08..0000000
--- a/docs/source/_static/custom.css
+++ /dev/null
@@ -1,93 +0,0 @@
-/* Improved toctree styling */
-
-/* Main page toctree container */
-.toctree-wrapper {
-  margin: 2rem 0;
-}
-
-/* Toctree list styling */
-.toctree-wrapper ul {
-  padding-left: 0;
-  list-style: none;
-}
-
-/* Toctree list items */
-.toctree-wrapper li {
-  margin: 0.4rem 0;
-  padding: 0.6rem 1rem;
-  border-bottom: 1.5px solid #c5d1e0;
-  border-left: 3px solid transparent;
-  transition: all 0.2s ease;
-}
-
-.toctree-wrapper li:hover {
-  border-left-color: #4f46e5;
-  background: rgba(79, 70, 229, 0.03);
-}
-
-.toctree-wrapper li:last-child {
-  border-bottom: 1.5px solid #c5d1e0;
-}
-
-/* Toctree links */
-.toctree-wrapper a.reference {
-  font-size: 1.1rem;
-  font-weight: 500;
-  color: #1a365d;
-  text-decoration: none;
-  display: inline-block;
-  transition: all 0.2s ease;
-  padding: 0.25rem 0;
-}
-
-.toctree-wrapper a.reference:hover {
-  color: #2563eb;
-  transform: translateX(5px);
-}
-
-/* Nested toctree items */
-.toctree-wrapper ul ul {
-  padding-left: 1.5rem;
-  margin-top: 0.3rem;
-}
-
-.toctree-wrapper ul ul li {
-  margin: 0.25rem 0;
-  padding: 0.4rem 0.8rem;
-  border-bottom: 1px solid #dce4f0;
-  border-left: 2px solid transparent;
-}
-
-.toctree-wrapper ul ul li:hover {
-  border-left-color: #6366f1;
-  background: rgba(99, 102, 241, 0.03);
-}
-
-.toctree-wrapper ul ul a.reference {
-  font-size: 1rem;
-  font-weight: 400;
-  color: #4a5568;
-}
-
-.toctree-wrapper ul ul a.reference:hover {
-  color: #4f46e5;
-}
-
-/* Toctree caption */
-.toctree-wrapper p.caption {
-  font-size: 1.3rem;
-  font-weight: 600;
-  color: #1e3a5f;
-  margin-bottom: 1rem;
-  padding-bottom: 0.5rem;
-  border-bottom: 3px solid #4f46e5;
-}
-
-/* Improve spacing on main page */
-div.section > .toctree-wrapper {
-  background: linear-gradient(135deg, #f0f4f8 0%, #e8eef5 100%);
-  padding: 1.5rem;
-  border-radius: 12px;
-  box-shadow: 0 4px 6px rgba(79, 70, 229, 0.08);
-  border: 1px solid #dce4f0;
-}
diff --git a/docs/source/api/index.rst b/docs/source/api/index.rst
deleted file mode 100644
index d1bd8af..0000000
--- a/docs/source/api/index.rst
+++ /dev/null
@@ -1,13 +0,0 @@
-API Reference
-=============
-
-This section contains the automatically generated Python API reference.
-
-Modules
--------
-
-.. autosummary::
-   :toctree: _autosummary
-   :recursive:
-
-   app
diff --git a/docs/source/conf.py b/docs/source/conf.py
deleted file mode 100644
index 406c718..0000000
--- a/docs/source/conf.py
+++ /dev/null
@@ -1,101 +0,0 @@
-# Configuration file for the Sphinx documentation builder.
-#
-# For the full list of built-in configuration values, see the documentation:
-# https://www.sphinx-doc.org/en/master/usage/configuration.html
-import os
-import shutil
-import sys
-from pathlib import Path
-
-sys.path.insert(0, os.path.abspath("../src"))
-
-# Copy tutorial notebooks from project root to docs/source/tutorials/
-tutorials_source = Path(__file__).parent.parent.parent / "tutorials"
-tutorials_dest = Path(__file__).parent / "tutorials"
-
-if tutorials_source.exists():
-    tutorials_dest.mkdir(exist_ok=True)
-    for notebook in tutorials_source.glob("*.ipynb"):
-        shutil.copy2(notebook, tutorials_dest / notebook.name)
-
-
-# -- Project information -----------------------------------------------------
-# https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information
-
-project = "python-template"
-copyright = "2025, Max"
-author = "Max"
-
-# -- General configuration ---------------------------------------------------
-
-# Add any Sphinx extension module names here, as strings. They can be
-# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
-# ones.
-extensions = [
-    "sphinx.ext.autodoc",
-    "sphinx.ext.autosummary",
-    "sphinx.ext.viewcode",
-    "sphinx.ext.napoleon",
-    "sphinxcontrib.mermaid",
-    "sphinx_design",
-    "nbsphinx",
-]
-
-# Add any paths that contain templates here, relative to this directory.
-templates_path = ["_templates"]
-
-# List of patterns, relative to source directory, that match files and
-# directories to ignore when looking for source files.
-# This pattern also affects html_static_path and html_extra_path.
-exclude_patterns = ["_build", "Thumbs.db", ".DS_Store", "**/.ipynb_checkpoints"]
-
-# nbsphinx configuration
-nbsphinx_execute = "always"  # Execute notebooks during build
-
-
-# -- Options for HTML output -------------------------------------------------
-
-# The theme to use for HTML and HTML Help pages.  See the documentation for
-# a list of builtin themes.
-#
-html_theme = "sphinx_book_theme"
-
-html_theme_options = {
-    "repository_branch": "devel",
-    "show_toc_level": 2,
-    "secondary_sidebar_items": ["page-toc"],
-    "use_sidenotes": True,
-    "home_page_in_toc": True,
-    "collapse_navigation": False,
-    "navigation_depth": 2,
-    "icon_links": [
-        {
-            "name": "GitHub",
-            "url": "https://github.com/max-models/template-projects/",
-            "icon": "fab fa-github",
-            "type": "fontawesome",
-        },
-        {
-            "name": "⭐ Star us!",
-            "url": "https://github.com/max-models/template-projects/",
-            "icon": "fas fa-star",
-            "type": "fontawesome",
-        },
-    ],
-}
-
-# Add any paths that contain custom static files (such as style sheets) here,
-# relative to this directory. They are copied after the builtin static files,
-# so a file named "default.css" will overwrite the builtin "default.css".
-breathe_separate_member_pages = False
-html_theme = "sphinx_book_theme"
-html_static_path = ["_static"]
-html_css_files = ["custom.css"]
-
-autosummary_generate = True
-
-autodoc_default_options = {
-    "members": True,
-    "undoc-members": False,
-    "show-inheritance": True,
-}
diff --git a/docs/source/getting_started.rst b/docs/source/getting_started.rst
deleted file mode 100644
index 4890f2d..0000000
--- a/docs/source/getting_started.rst
+++ /dev/null
@@ -1,11 +0,0 @@
-Getting Started
-===============
-
-Learn how to install and use `template-python`.
-
-.. toctree::
-   :maxdepth: 1
-
-   guides/install
-   guides/quickstart
-   tutorials
diff --git a/docs/source/guides/install.rst b/docs/source/guides/install.rst
deleted file mode 100644
index 04922ba..0000000
--- a/docs/source/guides/install.rst
+++ /dev/null
@@ -1,30 +0,0 @@
-Installation
-============
-
-Create and activate python environment::
-
-   python -m venv env
-   source env/bin/activate
-   pip install --upgrade pip
-
-Install the code and requirements with pip::
-
-   pip install -e .
-
-Run the code with::
-
-   template-python
-
-
-Build docs
-==========
-
-::
-
-   make html
-   cd ../
-   open docs/_build/html/index.html
-
-
-.. toctree::
-   :maxdepth: 1
diff --git a/docs/source/guides/quickstart.rst b/docs/source/guides/quickstart.rst
deleted file mode 100644
index 4bea978..0000000
--- a/docs/source/guides/quickstart.rst
+++ /dev/null
@@ -1,16 +0,0 @@
-Quickstart
-==========
-
-First, ensure that ``template-python`` is installed on your system.
-
-Basic Usage
------------
-
-After installation, you can run the application with::
-
-   template-python
-
-For more details, see the :doc:`install` guide.
-
-.. toctree::
-   :maxdepth: 1
diff --git a/docs/source/index.rst b/docs/source/index.rst
deleted file mode 100644
index 85109c7..0000000
--- a/docs/source/index.rst
+++ /dev/null
@@ -1,11 +0,0 @@
-template-python Documentation
-=============================
-
-Write the documentation of your python package here.
-
-.. toctree::
-   :maxdepth: 1
-   :caption: Documentation
-
-   getting_started
-   api/index
diff --git a/docs/source/tutorials.rst b/docs/source/tutorials.rst
deleted file mode 100644
index fed41de..0000000
--- a/docs/source/tutorials.rst
+++ /dev/null
@@ -1,10 +0,0 @@
-Tutorials
-=========
-
-Here are a few tutorials to help you get started.
-
-.. toctree::
-   :maxdepth: 1
-   :glob:
-
-   tutorials/*
diff --git a/pyproject.toml b/pyproject.toml
index b27f9e9..19beef9 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 requires = [ "setuptools", "wheel" ]
 
 [project]
-name = "template-python"
+name = "plasma-simulation"
 version = "0.1"
 description = "Template python repository."
 readme = "README.md"
@@ -26,7 +26,7 @@ optional-dependencies.dev = [
   "black[jupyter]",
   "isort",
   "ruff",
-  "template-python[test,docs]",
+  "plasma-simulation[test,docs]",
 ]
 # https://medium.com/@pratikdomadiya123/build-project-documentation-quickly-with-the-sphinx-python-2a9732b66594
 optional-dependencies.docs = [
@@ -44,8 +44,8 @@ optional-dependencies.docs = [
   "sphinx-design",
 ]
 optional-dependencies.test = [ "coverage", "pytest" ]
-urls."Source" = "https://github.com/max-models/template-python"
-scripts.template-python = "app.main:main"
+urls."Source" = "https://github.com/max-models/plasma-simulation"
+scripts.plasma-simulation = "plasma_simulation.main:main"
 
 [tool.setuptools.packages.find]
 where = [ "src" ]
diff --git a/rules/devel_rules.json b/rules/devel_rules.json
deleted file mode 100644
index fdcb5e2..0000000
--- a/rules/devel_rules.json
+++ /dev/null
@@ -1,33 +0,0 @@
-{
-  "name": "devel rules",
-  "target": "branch",
-  "source_type": "Repository",
-  "enforcement": "active",
-  "conditions": {
-    "ref_name": {
-      "exclude": [],
-      "include": ["~DEFAULT_BRANCH", "refs/heads/devel"]
-    }
-  },
-  "rules": [
-    {
-      "type": "deletion"
-    },
-    {
-      "type": "non_fast_forward"
-    },
-    {
-      "type": "pull_request",
-      "parameters": {
-        "required_approving_review_count": 1,
-        "dismiss_stale_reviews_on_push": true,
-        "require_code_owner_review": true,
-        "require_last_push_approval": true,
-        "required_review_thread_resolution": true,
-        "automatic_copilot_code_review_enabled": false,
-        "allowed_merge_methods": ["merge", "squash"]
-      }
-    }
-  ],
-  "bypass_actors": []
-}
diff --git a/rules/main_rules.json b/rules/main_rules.json
deleted file mode 100644
index ec1cd51..0000000
--- a/rules/main_rules.json
+++ /dev/null
@@ -1,33 +0,0 @@
-{
-  "name": "main rules",
-  "target": "branch",
-  "source_type": "Repository",
-  "enforcement": "active",
-  "conditions": {
-    "ref_name": {
-      "exclude": [],
-      "include": ["refs/heads/master", "refs/heads/main"]
-    }
-  },
-  "rules": [
-    {
-      "type": "deletion"
-    },
-    {
-      "type": "non_fast_forward"
-    },
-    {
-      "type": "pull_request",
-      "parameters": {
-        "required_approving_review_count": 1,
-        "dismiss_stale_reviews_on_push": true,
-        "require_code_owner_review": true,
-        "require_last_push_approval": true,
-        "required_review_thread_resolution": true,
-        "automatic_copilot_code_review_enabled": false,
-        "allowed_merge_methods": ["rebase"]
-      }
-    }
-  ],
-  "bypass_actors": []
-}
diff --git a/setup_project.sh b/setup_project.sh
deleted file mode 100755
index a245bd0..0000000
--- a/setup_project.sh
+++ /dev/null
@@ -1,71 +0,0 @@
-#!/usr/bin/env bash
-set -euo pipefail
-
-# Get the directory where this script is located
-SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
-cd "$SCRIPT_DIR"
-
-if [[ $# -ne 1 ]]; then
-  echo "Usage: $0 <app-name>"
-  exit 1
-fi
-
-APPNAME="$1"
-APPNAME_UNDERSCORE="${APPNAME//-/_}"
-
-# 1. Find and replace "template-python" with app name
-grep -rl "template-python" . --exclude-dir=.git --exclude-dir=docs/build | while IFS= read -r file; do
-  LC_ALL=C sed -i.bak "s/template-python/${APPNAME}/g" "$file"
-  rm -f "${file}.bak"
-done
-
-# Also replace template_python with appname_underscore
-grep -rl "template_python" . --exclude-dir=.git --exclude-dir=docs/build | while IFS= read -r file; do
-  LC_ALL=C sed -i.bak "s/template_python/${APPNAME_UNDERSCORE}/g" "$file"
-  rm -f "${file}.bak"
-done
-
-# 2. Move src/app to src/<appname_with_underscores>
-if [[ -d "src/app" ]]; then
-  mv src/app "src/${APPNAME_UNDERSCORE}"
-else
-  echo "Error: src/app does not exist"
-  exit 1
-fi
-
-# 3. Replace import in src/**/*.py and entry points
-# from app.main import main -> from <appname_with_underscores>.main import main
-# Also replace "app.main:main" -> "<appname_with_underscores>.main:main" in pyproject.toml
-
-find src -type f -name "*.py" -print0 | while IFS= read -r -d '' file; do
-  LC_ALL=C sed -i.bak \
-    "s/from app\.main import main/from ${APPNAME_UNDERSCORE}.main import main/g" \
-    "$file"
-  rm -f "${file}.bak"
-done
-
-# Replace app.main:main entry point in pyproject.toml
-if [[ -f "pyproject.toml" ]]; then
-  LC_ALL=C sed -i.bak "s/app\.main:main/${APPNAME_UNDERSCORE}.main:main/g" "pyproject.toml"
-  rm -f "pyproject.toml.bak"
-fi
-
-# 4. Update docs/source/api/index.rst to reference the new module name
-if [[ -f "docs/source/api/index.rst" ]]; then
-  LC_ALL=C sed -i.bak "s/^   app$/   ${APPNAME_UNDERSCORE}/" "docs/source/api/index.rst"
-  rm -f "docs/source/api/index.rst.bak"
-fi
-
-# 5. Remove the test_setup_script.yml workflow since it's no longer needed
-if [[ -f ".github/workflows/test_setup_script.yml" ]]; then
-  rm -f ".github/workflows/test_setup_script.yml"
-fi
-
-
-echo "Done:"
-echo "  Replaced 'template-python' → '${APPNAME}'"
-echo "  Replaced 'template_python' → '${APPNAME_UNDERSCORE}'"
-echo "  Moved src/app → src/${APPNAME_UNDERSCORE}"
-echo "  Replaced import statements and entry points"
-echo "  Removed .github/workflows/test_setup_script.yml"
-echo "You can now remove this script with: rm setup_project.sh"
diff --git a/src/app/main.py b/src/plasma_simulation/main.py
similarity index 100%
rename from src/app/main.py
rename to src/plasma_simulation/main.py
diff --git a/src/app/tests/unit/__init__.py b/src/plasma_simulation/tests/unit/__init__.py
similarity index 100%
rename from src/app/tests/unit/__init__.py
rename to src/plasma_simulation/tests/unit/__init__.py
diff --git a/src/app/tests/unit/test_app.py b/src/plasma_simulation/tests/unit/test_app.py
similarity index 71%
rename from src/app/tests/unit/test_app.py
rename to src/plasma_simulation/tests/unit/test_app.py
index 5e9299e..04c3681 100644
--- a/src/app/tests/unit/test_app.py
+++ b/src/plasma_simulation/tests/unit/test_app.py
@@ -1,5 +1,5 @@
 def test_import_app():
-    from app.main import main
+    from plasma_simulation.main import main
 
     print("app imported")
     main()
diff --git a/tutorials/example_tutorial.ipynb b/tutorials/example_tutorial.ipynb
deleted file mode 100644
index da4e6f7..0000000
--- a/tutorials/example_tutorial.ipynb
+++ /dev/null
@@ -1,43 +0,0 @@
-{
- "cells": [
-  {
-   "cell_type": "markdown",
-   "id": "0",
-   "metadata": {},
-   "source": [
-    "# Tutorial 1"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "id": "1",
-   "metadata": {},
-   "outputs": [],
-   "source": [
-    "print(\"Example tutorial which will be published in the docs!\")"
-   ]
-  }
- ],
- "metadata": {
-  "kernelspec": {
-   "display_name": "Python 3 (ipykernel)",
-   "language": "python",
-   "name": "python3"
-  },
-  "language_info": {
-   "codemirror_mode": {
-    "name": "ipython",
-    "version": 3
-   },
-   "file_extension": ".py",
-   "mimetype": "text/x-python",
-   "name": "python",
-   "nbconvert_exporter": "python",
-   "pygments_lexer": "ipython3",
-   "version": "3.13.3"
-  }
- },
- "nbformat": 4,
- "nbformat_minor": 5
-}