GM left and right intermediate zones (PAM50_atlas_32.nii.gz and PAM50_atlas_33.nii.gz) seem to have some voxels outside of the cord.
cd $SCT_DIR/data/PAM50
fsleyes template/PAM50_t2.nii.gz atlas/PAM50_atlas_3[2-3].nii.gz
Go to z slice 428:
Also see z slices 289 to 206.
GM left and right intermediate zones (
PAM50_atlas_32.nii.gzandPAM50_atlas_33.nii.gz) seem to have some voxels outside of the cord.Go to
zslice 428:Also see
zslices 289 to 206.