I was using GRETNA2.0 in matlab2013b under windows 10, when it came to the static correlation step, an error came up:
The pipeline PIPE is now being processed.
Started on 23-Dec-2018 16:33:59
user: fcyoung, host: unknown, system: windows
23-Dec-2018 16:33:59 StaticFC00001 submitted (1 run / 0 fail / 0 done / 0 left)
23-Dec-2018 16:34:14 StaticFC00001 failed (0 run / 1 fail / 0 done / 0 left)
The processing of the pipeline is terminated.
See report below for job completion status.
23-Dec-2018 16:34:14
The execution of the following job has failed :
More infos can be found in the individual log files. Use the following command to display these logs :
psom_pipeline_visu('E:\DpressionData\SmoothedfMRIdata\health_fmri_data\GretnaLogs\FunPreproAndNetCon\','log',JOB_NAME)
All jobs have been processed, but some jobs have failed.
You may want to restart the pipeline latter if you managed to fix the problems.
Error using gretna_GUI_PreprocessInterface>RunBtn_Callback (line 1006)
\nHC001\nMATLAB is running in headless mode. Figure windows will not be
displayed.
Warning: Function assert has the same name as a MATLAB builtin. We suggest
you rename the function to avoid a potential name conflict.
To get started, type one of these: helpwin, helpdesk, or demo.
For product information, visit www.mathworks.com.
Warning: psom:default: The following field(s) were ignored in the structure
job : OutputImgFile
In psom_set_defaults at 101
In psom_run_job at 111
Log of the (matlab) job : StaticFC00001
Started on 23-Dec-2018 16:34:09
User: fcyoung
host : unknown
system : windows
The job starts now !
Something went bad ... the job has FAILED !
The last error message occured was :
Index exceeds matrix dimensions.
File E:\matlab2013b\toolbox\gretna-2.0.0_release\runfun\gretna_RUN_StaticFC.m
at line 118
File E:\matlab2013b\toolbox\gretna-2.0.0_release\runfun\gretna_RUN_StaticFC.m
at line 45
File E:\matlab2013b\toolbox\gretna-2.0.0_release\runfun\gretna_RUN_StaticFC.m
at line 45
File E:\matlab2013b\toolbox\gretna-2.0.0_release\psom\psom_run_job.m at line
214
File E:\matlab2013b\toolbox\gretna-2.0.0_release\psom\psom_run_job.m at line
128
Checking outputs
The output file or directory
E:\DpressionData\SmoothedfMRIdata\health_fmri_data\GretnaSFCMatrixR\rHC001.txt
has not been generated!
The output file or directory
E:\DpressionData\SmoothedfMRIdata\health_fmri_data\GretnaTimeCourse\HC001.txt
has not been generated!
23-Dec-2018 16:34:10 : The job has FAILED
Total time used to process the job : 1.24 sec.
ans =
Error in gui_mainfcn (line 96)
feval(varargin{:});
Error in gretna_GUI_PreprocessInterface (line 42)
gui_mainfcn(gui_State, varargin{:});
Error in
@(hObject,eventdata)gretna_GUI_PreprocessInterface('RunBtn_Callback',hObject,eventdata,guidata(hObject))
Error while evaluating uicontrol Callback
I was wandering how can I fix it.
It will be super helpful if someone could make a suggestion, thank you !
I was using GRETNA2.0 in matlab2013b under windows 10, when it came to the static correlation step, an error came up:
The pipeline PIPE is now being processed.
Started on 23-Dec-2018 16:33:59
user: fcyoung, host: unknown, system: windows
23-Dec-2018 16:33:59 StaticFC00001 submitted (1 run / 0 fail / 0 done / 0 left)
23-Dec-2018 16:34:14 StaticFC00001 failed (0 run / 1 fail / 0 done / 0 left)
The processing of the pipeline is terminated.
See report below for job completion status.
23-Dec-2018 16:34:14
The execution of the following job has failed :
More infos can be found in the individual log files. Use the following command to display these logs :
All jobs have been processed, but some jobs have failed.
You may want to restart the pipeline latter if you managed to fix the problems.
Error using gretna_GUI_PreprocessInterface>RunBtn_Callback (line 1006)
\nHC001\nMATLAB is running in headless mode. Figure windows will not be
displayed.
Warning: Function assert has the same name as a MATLAB builtin. We suggest
you rename the function to avoid a potential name conflict.
To get started, type one of these: helpwin, helpdesk, or demo.
For product information, visit www.mathworks.com.
Warning: psom:default: The following field(s) were ignored in the structure
job : OutputImgFile
Log of the (matlab) job : StaticFC00001
Started on 23-Dec-2018 16:34:09
User: fcyoung
host : unknown
system : windows
The job starts now !
Something went bad ... the job has FAILED !
The last error message occured was :
Index exceeds matrix dimensions.
File E:\matlab2013b\toolbox\gretna-2.0.0_release\runfun\gretna_RUN_StaticFC.m
at line 118
File E:\matlab2013b\toolbox\gretna-2.0.0_release\runfun\gretna_RUN_StaticFC.m
at line 45
File E:\matlab2013b\toolbox\gretna-2.0.0_release\runfun\gretna_RUN_StaticFC.m
at line 45
File E:\matlab2013b\toolbox\gretna-2.0.0_release\psom\psom_run_job.m at line
214
File E:\matlab2013b\toolbox\gretna-2.0.0_release\psom\psom_run_job.m at line
128
Checking outputs
The output file or directory
E:\DpressionData\SmoothedfMRIdata\health_fmri_data\GretnaSFCMatrixR\rHC001.txt
has not been generated!
The output file or directory
E:\DpressionData\SmoothedfMRIdata\health_fmri_data\GretnaTimeCourse\HC001.txt
has not been generated!
23-Dec-2018 16:34:10 : The job has FAILED
Total time used to process the job : 1.24 sec.
ans =
Error in gui_mainfcn (line 96)
feval(varargin{:});
Error in gretna_GUI_PreprocessInterface (line 42)
gui_mainfcn(gui_State, varargin{:});
Error in
@(hObject,eventdata)gretna_GUI_PreprocessInterface('RunBtn_Callback',hObject,eventdata,guidata(hObject))
Error while evaluating uicontrol Callback
I was wandering how can I fix it.
It will be super helpful if someone could make a suggestion, thank you !