Hi, I have noticed that align long stacks takes quite a long time. Therefore, I was wondering if it would be possible to add support through GPU CLIJ2. I have taken a look at your code and there are some operations that could be easily substituted such as:
result = cvMatch_Template.doMatch(tar.crop(), ref, method, edge); (found in imagej_plugins/current/src/Template Matching/Align_slices.java /, line 155)
and use instead the function CLIJ2_similar from CLIJ2 (code (here)[https://clij.github.io/clij2-docs/reference_similar]) and same goes for the logarithm operations of gaussianPeakFit (line 211), which could be changed for (CLIJ2_logarithm)[https://clij.github.io/clij2-docs/reference_logarithm].
Please, let me know if you would like test these changes as I really would like to help you with the code.
Kind regards,
S
Hi, I have noticed that align long stacks takes quite a long time. Therefore, I was wondering if it would be possible to add support through GPU CLIJ2. I have taken a look at your code and there are some operations that could be easily substituted such as:
result = cvMatch_Template.doMatch(tar.crop(), ref, method, edge); (found in imagej_plugins/current/src/Template Matching/Align_slices.java /, line 155)and use instead the function
CLIJ2_similarfrom CLIJ2 (code (here)[https://clij.github.io/clij2-docs/reference_similar]) and same goes for the logarithm operations ofgaussianPeakFit(line 211), which could be changed for (CLIJ2_logarithm)[https://clij.github.io/clij2-docs/reference_logarithm].Please, let me know if you would like test these changes as I really would like to help you with the code.
Kind regards,
S