From cfc47536984c39cbfc78f3a08ef9107c7ac0dbcd Mon Sep 17 00:00:00 2001
From: neurocontainers-bot <neurocontainers-bot@neurodesk.github.io>
Date: Fri, 19 Jun 2026 03:28:18 +0000
Subject: [PATCH] Update apps.json from neurocontainers releases
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

  Auto-generated from release files in neurocontainers repo.

  🤖 Generated with neurocontainers automation
---
 neurodesk/apps.json              | 101 +++++++++++++++++++++++++++++++
 neurodesk/icons/brainlesion.png  | Bin 0 -> 974 bytes
 neurodesk/icons/cartool.png      | Bin 0 -> 3928 bytes
 neurodesk/icons/eharmonize.png   | Bin 0 -> 6081 bytes
 neurodesk/icons/fitlins.png      | Bin 0 -> 6081 bytes
 neurodesk/icons/lqt.png          | Bin 0 -> 1096 bytes
 neurodesk/icons/mipav.png        | Bin 0 -> 6081 bytes
 neurodesk/icons/soopct.png       | Bin 0 -> 1417 bytes
 neurodesk/icons/terastitcher.png | Bin 0 -> 6081 bytes
 9 files changed, 101 insertions(+)
 create mode 100644 neurodesk/icons/brainlesion.png
 create mode 100644 neurodesk/icons/cartool.png
 create mode 100644 neurodesk/icons/eharmonize.png
 create mode 100644 neurodesk/icons/fitlins.png
 create mode 100644 neurodesk/icons/lqt.png
 create mode 100644 neurodesk/icons/mipav.png
 create mode 100644 neurodesk/icons/soopct.png
 create mode 100644 neurodesk/icons/terastitcher.png

diff --git a/neurodesk/apps.json b/neurodesk/apps.json
index adfe0791..3bdb8dec 100644
--- a/neurodesk/apps.json
+++ b/neurodesk/apps.json
@@ -446,6 +446,22 @@
             "structural imaging"
         ]
     },
+    "brainlesion": {
+        "apps": {
+            "brainlesion 1.0.0": {
+                "version": "20250805",
+                "exec": "",
+                "apptainer_args": []
+            }
+        },
+        "categories": [
+            "data organisation",
+            "image segmentation",
+            "machine learning",
+            "structural imaging",
+            "workflows"
+        ]
+    },
     "brainlifecli": {
         "apps": {
             "brainlifecli 1.7.0": {
@@ -547,6 +563,19 @@
             "data organisation"
         ]
     },
+    "cartool": {
+        "apps": {
+            "cartool 5.06.04": {
+                "version": "20260605",
+                "exec": "",
+                "apptainer_args": []
+            }
+        },
+        "categories": [
+            "electrophysiology",
+            "visualization"
+        ]
+    },
     "cat12": {
         "apps": {
             "cat12GUI-cat12 12.9": {
@@ -893,6 +922,18 @@
             "electrophysiology"
         ]
     },
+    "eharmonize": {
+        "apps": {
+            "eharmonize 1.0.0": {
+                "version": "20260611",
+                "exec": "",
+                "apptainer_args": []
+            }
+        },
+        "categories": [
+            "data organisation"
+        ]
+    },
     "elastix": {
         "apps": {
             "elastix 5.1.0": {
@@ -991,6 +1032,18 @@
             "electrophysiology"
         ]
     },
+    "fitlins": {
+        "apps": {
+            "fitlins 0.11.0": {
+                "version": "20260611",
+                "exec": "",
+                "apptainer_args": []
+            }
+        },
+        "categories": [
+            "functional imaging"
+        ]
+    },
     "fmriprep": {
         "apps": {
             "fmriprep 20.1.3": {
@@ -1655,6 +1708,18 @@
             "structural imaging"
         ]
     },
+    "lqt": {
+        "apps": {
+            "lqt 0.1.0": {
+                "version": "20260603",
+                "exec": "",
+                "apptainer_args": []
+            }
+        },
+        "categories": [
+            "structural imaging"
+        ]
+    },
     "lstai": {
         "apps": {
             "lstai 1.2.0": {
@@ -1838,6 +1903,18 @@
             "structural imaging"
         ]
     },
+    "mipav": {
+        "apps": {
+            "mipav 11.3.3": {
+                "version": "20260611",
+                "exec": "",
+                "apptainer_args": []
+            }
+        },
+        "categories": [
+            "visualization"
+        ]
+    },
     "mipview": {
         "apps": {
             "mipview 0.1.2": {
@@ -2801,6 +2878,18 @@
             "shape analysis"
         ]
     },
+    "soopct": {
+        "apps": {
+            "soopct 0.0.0": {
+                "version": "20260611",
+                "exec": "",
+                "apptainer_args": []
+            }
+        },
+        "categories": [
+            "structural imaging"
+        ]
+    },
     "sovabids": {
         "apps": {
             "sovabids 0.3.1a0": {
@@ -2980,6 +3069,18 @@
             "image segmentation"
         ]
     },
+    "terastitcher": {
+        "apps": {
+            "terastitcher 1.11.10": {
+                "version": "20260619",
+                "exec": "",
+                "apptainer_args": []
+            }
+        },
+        "categories": [
+            "visualization"
+        ]
+    },
     "tgvqsm": {
         "apps": {
             "tgvqsm 1.0.0": {
diff --git a/neurodesk/icons/brainlesion.png b/neurodesk/icons/brainlesion.png
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