Hi,
I ran modkit dmr pair without replicates. Is it normal that no balance_map_pvalue and balance effect_size in my result bed file? Can we expect that the map_p_value will generally reduce when more replicates are included? And do you have any suggestion on the threshold for filtering map_pvalue (both the balance and non-balance)? like adjusted p<0.05. Thanks a lot.
Best,
Alvin