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Modification of prepare_inputs.py for the example in Fortran with FTorch #34

@ftran1

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@ftran1

The prepare_inputs.py script should be modified such that
python prepare_inputs.py --output_dir features --molecule H2 --basis def2-QZVP
does not fail with
prepare_inputs.py_orig: error: unrecognized arguments: --output_dir features --molecule H2 --basis def2-QZVP

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