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# Generated by roxygen2: do not edit by hand
export(aggregate_multiplex_network)
export(calcIncoherence)
export(calcModularitySWnessZScore)
export(calcTopologicalIndices)
export(calc_QSS)
export(calc_QSS_extinction_dif)
export(calc_QSS_extinction_dif_grp)
export(calc_QSS_extinctions_seq)
export(calc_centrality)
export(calc_incoherence)
export(calc_interaction_intensity)
export(calc_interaction_intensity2)
export(calc_modularity)
export(calc_modularity_swness_zscore)
export(calc_quantitative_connectance)
export(calc_stability_threshold)
export(calc_svd_entropy)
export(calc_svd_entropy_importance)
export(calc_swness_zscore)
export(calc_topological_indices)
export(calc_topological_roles)
export(calc_weighted_topological_indices)
export(classify_topological_roles)
export(convert_infomap_result_to_muxviz)
export(convert_to_intra_format)
export(convert_to_supra_adjacency)
export(curveBall)
export(curve_ball)
export(fromGLVadjToIgraph)
export(fromIgraphToMgraph)
export(generateERbasal)
export(generate_er_basal)
export(generate_niche)
export(generate_shuffled_seq)
export(generate_shuffled_seq_tol)
export(harmonize_node_sets)
export(plotTrophLevel)
export(plot_multi3D)
export(plot_multiplex_modules)
export(plot_stability_curve)
export(plot_troph_level)
export(plot_troph_level_ggplot)
export(plot_troph_level_ggraph)
export(readMultiplex)
export(readNetwork)
export(run_infomap)
export(run_infomap_multi)
export(shuffle_network_deg)
export(shuffle_network_ws)
export(toGLVadjMat)
export(write_multilayer_network)
import(Matrix)
import(NetIndices)
import(dplyr)
import(ggplot2)
import(ggraph)
import(ggrepel)
import(igraph)
import(rgl)
import(rlang)
import(tibble)
import(tidygraph)
import(tidyr)
import(viridis)
importFrom(NetIndices,TrophInd)
importFrom(RColorBrewer,brewer.pal)
importFrom(doFuture,registerDoFuture)
importFrom(dplyr,"%>%")
importFrom(dplyr,arrange)
importFrom(dplyr,bind_rows)
importFrom(dplyr,dense_rank)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,if_else)
importFrom(dplyr,inner_join)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,rename)
importFrom(dplyr,select)
importFrom(dplyr,summarise_all)
importFrom(foreach,"%dopar%")
importFrom(foreach,foreach)
importFrom(future,multisession)
importFrom(future,sequential)
importFrom(future.apply,future_lapply)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_viridis_c)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,as_edgelist)
importFrom(igraph,average.path.length)
importFrom(igraph,cluster_spinglass)
importFrom(igraph,degree)
importFrom(igraph,ecount)
importFrom(igraph,get.adjacency)
importFrom(igraph,graph_from_adjacency_matrix)
importFrom(igraph,graph_from_data_frame)
importFrom(igraph,transitivity)
importFrom(igraph,vcount)
importFrom(tibble,tibble)
importFrom(viridis,viridis)