Hi @jkokosar @linlabbcm,
Can we use a bam file to run ROSE2 or does it need to be pre-processed using the bamliquidator?
How do we set the path environment for ROSE2 and is it compatible with python 3?
Is the usage the same as python ROSE_main.py
Do I need to run the R scripts separately or is it part and parcel of the analysis pipeline.
What are the -s and -t defaults
Pretty new at this. Could use some clarification. Thank you for your time.
Hi @jkokosar @linlabbcm,
Can we use a bam file to run ROSE2 or does it need to be pre-processed using the bamliquidator?
How do we set the path environment for ROSE2 and is it compatible with python 3?
Is the usage the same as python ROSE_main.py
Do I need to run the R scripts separately or is it part and parcel of the analysis pipeline.
What are the -s and -t defaults
Pretty new at this. Could use some clarification. Thank you for your time.