Hello,
I have been running ra on a ~5 Gb plant genome, highly heterozygous.
The input file is about 157 Gb of ONT reads (>QV7, above 10 kb), N50 24 kb. After about 5 days, the job dies while still at the minimap stage and the only message I have is:
[M::worker_pipeline::479382.631*42.28] mapped 30111 sequences
[M::worker_pipeline::479526.304*42.27] mapped 29912 sequences
[ERROR] failed to write the results
furthermore, the .paf file and the working dir are gone.
Is there a way to run separately (or even outside of ra) the alignment step?
I will test raven as well, but a colleague told me that it died as well (I don't know more details about this though).
Thanks
Hello,
I have been running ra on a ~5 Gb plant genome, highly heterozygous.
The input file is about 157 Gb of ONT reads (>QV7, above 10 kb), N50 24 kb. After about 5 days, the job dies while still at the minimap stage and the only message I have is:
furthermore, the .paf file and the working dir are gone.
Is there a way to run separately (or even outside of ra) the alignment step?
I will test raven as well, but a colleague told me that it died as well (I don't know more details about this though).
Thanks