GAHandler.py:107 on_GA_run_button_clicked() DEBUG Ok, I'll call RunCalculations.runGA().
GAHandler.py:112 on_GA_run_button_clicked() DEBUG Started PID = 176209
GAHandler.py:118 call_runner() DEBUG Calling
filter.py:121 filter_matrix() INFO Dimensions of the original matrix
filter.py:122 filter_matrix() INFO (67, 1875)
filter.py:128 filter_matrix() INFO Dimensions of the matrix after variance cut
filter.py:129 filter_matrix() INFO (67, 539)
/home/helitonmrf/miniconda3/envs/QSARModelingGUI/lib/python3.9/site-packages/sklearn/preprocessing/_data.py:194: UserWarning: Numerical issues were encountered when centering the data and might not be solved. Dataset may contain too large values. You may need to prescale your features.
warnings.warn("Numerical issues were encountered "
Process Process-1:
Traceback (most recent call last):
File "/home/helitonmrf/miniconda3/envs/QSARModelingGUI/lib/python3.9/multiprocessing/process.py", line 315, in _bootstrap
self.run()
File "/home/helitonmrf/miniconda3/envs/QSARModelingGUI/lib/python3.9/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/home/helitonmrf/Projects/QSARModelingPy/GUI/GAHandler.py", line 119, in call_runner
RunCalculations.runGA(self.ga_config)
File "/home/helitonmrf/Projects/QSARModelingPy/GUI/runCalculations.py", line 21, in runGA
return runGA(config)
File "/home/helitonmrf/Projects/QSARModelingCore/qsarmodelingpy/runGa.py", line 45, in run
dfRest = filter_matrix(
File "/home/helitonmrf/Projects/QSARModelingCore/qsarmodelingpy/filter.py", line 132, in filter_matrix
indCorr = correlation_cut(X.values, y, corr_cut)
File "/home/helitonmrf/Projects/QSARModelingCore/qsarmodelingpy/filter.py", line 48, in correlation_cut
corr = abs(np.dot(np.transpose(autoscale(X)), autoscale(y))/(len(y)-1))
File "<__array_function__ internals>", line 5, in dot
ValueError: shapes (539,67) and (63,2) not aligned: 67 (dim 1) != 63 (dim 0)
Using the GUI, the user can open a matrix and a vector that are dimensionally incompatible. For example,
Details