Similar to issue #14, but I am on Linux (Pop! OS 22.04) and when I plug in my phone, I don't get prompted to debug.
I have a Pixel 4a running Android v13.
I only turned on USB debugging (under Dev Options), and didn't see the other two options you mention in the app (Disable Permission Monitoring or USB Debugging (Security Settings)).
Let me know if there is more information I can provide.
Thanks!
phlepper