From 686443397a8be713f2b82792c6ec0468bbdf9696 Mon Sep 17 00:00:00 2001
From: kojix2 <2xijok@gmail.com>
Date: Mon, 18 May 2026 14:03:59 +0900
Subject: [PATCH] Fix operator precedence bug in
 SAMAlignment.getBaseModificationSets()

---
 src/main/java/org/igv/sam/SAMAlignment.java | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/main/java/org/igv/sam/SAMAlignment.java b/src/main/java/org/igv/sam/SAMAlignment.java
index a849ba375..fab660e7f 100644
--- a/src/main/java/org/igv/sam/SAMAlignment.java
+++ b/src/main/java/org/igv/sam/SAMAlignment.java
@@ -361,7 +361,7 @@ public byte getPhred(double position) {
 
     public List<BaseModificationSet> getBaseModificationSets() {
 
-        if (baseModificationSets == null && record.hasAttribute("Mm") || record.hasAttribute("MM")) {
+        if (baseModificationSets == null && (record.hasAttribute("Mm") || record.hasAttribute("MM"))) {
 
             Object mm = record.hasAttribute("Mm") ? record.getAttribute("Mm") : record.getAttribute("MM");
             byte[] ml = (byte[]) (record.hasAttribute("Ml") ? record.getAttribute("Ml") : record.getAttribute("ML"));