Deadlock when using stdin

[Procrat]

The program sometimes hangs when I try to read from stdin.

I'm not fully familiar with the code, but I think the problem is that this sem_wait gets called multiple times because it's in a loop, but the semaphore only gets unlocked once. (In a particular run, that sem_wait was called two times but, this sem_poll only got called once.)

[dongjaek]

I suggest that you try a fork and a pull request for faster service.
On May 17, 2016 12:11 PM, "Stijn Seghers" notifications@github.com wrote:

The program sometimes hangs when I try to read from stdin.

I'm not fully familiar with the code, but I think the problem is that this
sem_wait

FragGeneScanPlus/run_hmm.c

Line 625 in eb2ee2b

sem_wait(sema_w);

gets called multiple times because it's in a loop, but the semaphore only
gets unlocked once. (In a particular run, that sem_wait was called 2
times but, this sem_poll

FragGeneScanPlus/run_hmm.c

Line 737 in eb2ee2b

sem_post(sema_w);

only got called once.)

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#6