Trying to run bgwas3 make full gives TypeError: assembly() takes 1 positional argument but 2 were given. Here is the log: pipeline.log
The assembly function appears to be incomplete and the rest of the pipeline can't run past it.
Is it possible to update the pipeline such that pre-assembled sequences can be input and the assembly task can be avoided? I think this would be more consistent with the flow diagram here:
https://github.com/rarichards/bgwas3/blob/master/docs/_build/html/steps.html
Trying to run
bgwas3 make fullgivesTypeError: assembly() takes 1 positional argument but 2 were given. Here is the log: pipeline.logThe assembly function appears to be incomplete and the rest of the pipeline can't run past it.
bgwas3/bgwas3/bgwas3.py
Line 28 in 336d743
Is it possible to update the pipeline such that pre-assembled sequences can be input and the assembly task can be avoided? I think this would be more consistent with the flow diagram here: https://github.com/rarichards/bgwas3/blob/master/docs/_build/html/steps.html