Describe the bug
Last observation of some subjects were shown as "ignored" in individual plots
To Reproduce
A minimal example was created using nlmixr2 using the object saved in the attached file (untar first) as follows:
library(nlmixr2)
library(ggPMX)
nlmixrObj <- readRDS("nlmixrObj.RDS")
pmx_nlmixr(nlmixrObj) %>% pmx_plot_individual(which_pages = "all")
nlmixrObj.RDS.tar.gz
Expected behavior
All observations should shown as "accepted" as no censoring is done -- all observations used in the model.
Screenshots
Output of the scripts:
The last observations from subjects IDs 4, 14 and 23 are shown as ignored.
Package and platform:
- Operating system: Red Hat Enterprise Linux 8
- ggplot2 version: 3.4.2
- ggPMX version: 1.2.10
sessionInfo()
## R version 4.0.4 (2021-02-15)
## Platform: x86_64-redhat-linux-gnu (64-bit)
## Running under: Red Hat Enterprise Linux 8.7 (Ootpa)
##
## Matrix products: default
## BLAS: /usr/lib64/libblas.so.3.8.0
## LAPACK: /opt/mango/R/4.0.4/lib/R/lib/libRlapack.so
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods
## [7] base
##
## other attached packages:
## [1] ggPMX_1.2.10 nlmixr2_2.0.9 nlmixr2data_2.0.7
##
## loaded via a namespace (and not attached):
## [1] Rcpp_1.0.11 lattice_0.20-41 vpc_1.2.2
## [4] zoo_1.8-9 assertthat_0.2.1 digest_0.6.27
## [7] utf8_1.2.1 ggforce_0.4.1 rxode2random_2.0.11
## [10] R6_2.5.0 plyr_1.8.6 backports_1.2.1
## [13] sys_3.4 evaluate_0.14 ggplot2_3.4.2
## [16] pillar_1.6.0 rlang_1.1.1 rxode2ll_2.0.11
## [19] rstudioapi_0.13 data.table_1.14.0 checkmate_2.0.0
## [22] rmarkdown_2.7 labeling_0.4.2 qs_0.24.1
## [25] dparser_1.3.1-10 stringr_1.4.0 PreciseSums_0.4
## [28] polyclip_1.10-4 nlmixr2plot_2.0.7 munsell_0.5.0
## [31] symengine_0.1.5 compiler_4.0.4 xfun_0.22
## [34] pkgconfig_2.0.3 htmltools_0.5.1.1 tidyselect_1.1.0
## [37] tibble_3.1.1 rxode2parse_2.0.16 reshape_0.8.8
## [40] fansi_0.4.2 withr_2.5.0 crayon_1.4.1
## [43] dplyr_1.0.5 MASS_7.3-53.1 grid_4.0.4
## [46] nlme_3.1-152 GGally_2.1.1 gtable_0.3.0
## [49] lifecycle_1.0.3 DBI_1.1.1 magrittr_2.0.1
## [52] scales_1.2.1 RcppParallel_5.0.3 cli_3.6.1
## [55] stringi_1.5.3 cachem_1.0.4 n1qn1_6.0.1-10
## [58] farver_2.1.0 rxode2_2.0.13 ellipsis_0.3.1
## [61] generics_0.1.0 vctrs_0.6.3 stringfish_0.15.1
## [64] lotri_0.4.3 RApiSerialize_0.1.0 RColorBrewer_1.1-2
## [67] tools_4.0.4 glue_1.4.2 tweenr_1.0.2
## [70] purrr_0.3.4 rxode2et_2.0.10 fastmap_1.1.0
## [73] yaml_2.2.1 colorspace_2.0-0 lbfgsb3c_2020-3.2
## [76] nlmixr2est_2.1.6 memoise_2.0.0 knitr_1.32
Additional context
The example was implemented in nlmixr2 but we have observed similar issues with NONMEM results.
Describe the bug
Last observation of some subjects were shown as "ignored" in individual plots
To Reproduce
A minimal example was created using nlmixr2 using the object saved in the attached file (untar first) as follows:
nlmixrObj.RDS.tar.gz
Expected behavior
All observations should shown as "accepted" as no censoring is done -- all observations used in the model.
Screenshots
Output of the scripts:
The last observations from subjects IDs 4, 14 and 23 are shown as ignored.
Package and platform:
Additional context
The example was implemented in nlmixr2 but we have observed similar issues with NONMEM results.