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on:
workflow_dispatch:
inputs:
debug_enabled:
type: boolean
description: 'Run the build with tmate debugging enabled (https://github.com/marketplace/actions/debugging-with-tmate)'
required: false
default: false
name: tmate
jobs:
R-CMD-check:
timeout-minutes: 120
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }}) ${{ matrix.config.label }}
strategy:
fail-fast: false
matrix:
config:
# - {os: windows-latest, r: 'devel' }
- {os: windows-latest, r: 'release' }
# - {os: windows-latest, r: 'release', parallelly: 'develop' }
# - {os: windows-latest, r: 'oldrel' }
# - {os: macOS-latest, r: 'devel' }
# - {os: macOS-latest, r: 'release' }
# - {os: macOS-latest, r: 'oldrel' }
# - {os: ubuntu-latest, r: 'devel' }
# - {os: ubuntu-latest, r: 'release' }
# - {os: ubuntu-latest, r: 'oldrel' }
# - {os: ubuntu-latest, r: 'oldrel-1' }
# - {os: ubuntu-latest, r: 'oldrel-2' }
#
# - {os: ubuntu-latest, r: 'release' , availablecores: 1, label: 'availableCores.system=1' }
# - {os: ubuntu-latest, r: 'release' , availablecores: 2, label: 'availableCores.system=2' }
# - {os: ubuntu-latest, r: 'release' , language: ko, label: ko }
# - {os: ubuntu-latest, r: 'release' , language: zh_CN, label: zh_CN }
# - {os: ubuntu-latest, r: 'release' , language: zh_TW, label: zh_TW }
# - {os: ubuntu-latest, r: 'release' , plan: multicore, fork_multithreading_enable: false, label: 'multicore, no-multithreading-in-forks' }
# - {os: ubuntu-latest, r: 'release' , plan: multisession, fork_multithreading_enable: false, label: 'multisession, no-multithreading-in-forks' }
# - {os: ubuntu-latest, r: 'release' , psock_relay_immediate: false, label: 'no-immediate-relay-in-psock' }
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
R_KEEP_PKG_SOURCE: yes
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
## Test in other locale (optional)
LANGUAGE: ${{ matrix.config.language }}
## R (>= 4.4.0) Note, no trailing underscore (sic!)
_R_COMPARE_LANG_OBJECTS: eqonly
## R CMD check
_R_CHECK_CRAN_INCOMING_: false
_R_CHECK_MATRIX_DATA_: true
_R_CHECK_SUGGESTS_ONLY_: true
_R_CHECK_THINGS_IN_TEMP_DIR_: true
_R_CHECK_TESTS_NLINES_: 300
RCMDCHECK_ERROR_ON: note
## Specific to futures
R_PARALLELLY_AVAILABLECORES_SYSTEM: ${{ matrix.config.availablecores }}
R_FUTURE_RNG_ONMISUSE: error
R_FUTURE_GLOBALS_KEEPWHERE: ${{ matrix.config.globals_keepWhere }}
R_PARALLELLY_BRANCH: ${{ matrix.config.parallelly }}
steps:
- uses: actions/checkout@v4
- name: Setup and launch tmate session
uses: mxschmitt/action-tmate@v3
if: ${{ github.event_name == 'workflow_dispatch' && inputs.debug_enabled }}
with:
detached: true
limit-access-to-actor: true
- uses: r-lib/actions/setup-pandoc@v2
- uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
http-user-agent: ${{ matrix.config.http-user-agent }}
use-public-rspm: true
- name: Install system dependencies for Rmpi (OpenMPI)
if: runner.os == 'Linux'
run: |
sudo apt install -y libopenmpi-dev openmpi-bin
- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: |
any::rcmdcheck
any::remotes
needs: check
- name: Install package itself (special case)
run: |
install.packages(".", repos = NULL, type = "source") ## needed by parallel workers
pver <- Sys.getenv("R_PARALLELLY_BRANCH")
if (nzchar(pver)) {
remotes::install_github("futureverse/parallelly", ref = pver)
}
shell: Rscript {0}
- name: Session info
run: |
options(width = 100)
parallelly::availableCores(which = "all")
sapply(c(physical_cores = FALSE, logical_cores = TRUE), parallel::detectCores)
if (require(RhpcBLASctl, quietly=TRUE)) c(get_num_procs = get_num_procs(), get_num_cores = get_num_cores(), blas_get_num_procs = blas_get_num_procs(), omp_get_num_procs = omp_get_num_procs(), omp_get_max_threads = omp_get_max_threads())
capabilities()
pkgs <- installed.packages()[, "Package"]
sessioninfo::session_info(pkgs, include_base = TRUE)
## Verify LANGUAGE settings by generating a translatable error
cat(sprintf("LANGUAGE=%s\n", sQuote(Sys.getenv("LANGUAGE"))))
cat(sprintf("locales: %s\n", sQuote(Sys.getlocale())))
tryCatch(log("a"), error = conditionMessage)
shell: Rscript {0}
- name: Check
if: runner.os != 'Windows'
env:
## FIXME: Eventually update to 'R_FUTURE_GLOBALS_ONREFERENCE=error'
R_FUTURE_GLOBALS_ONREFERENCE: "warning"
R_FUTURE_PLAN: ${{ matrix.config.plan }}
R_FUTURE_FORK_ENABLE: ${{ matrix.config.fork_enable }}
R_FUTURE_FORK_MULTITHREADING_ENABLE: ${{ matrix.config.fork_multithreading_enable }}
R_FUTURE_PSOCK_RELAY_IMMEDIATE: ${{ matrix.config.psock_relay_immediate }}
run: |
if (nzchar(Sys.getenv("R_FUTURE_PLAN")) || getRversion() < "3.5.0") Sys.setenv(RCMDCHECK_ERROR_ON = "error")
rcmdcheck::rcmdcheck(
build_args = if (getRversion() < "3.5.0") "--no-build-vignettes",
args = c("--no-manual", "--as-cran", if (getRversion() < "3.5.0") c("--no-vignettes", "--no-build-vignettes", "--ignore-vignettes")),
check_dir = "check"
)
shell: Rscript {0}
- name: Check (Windows)
if: runner.os == 'Windows'
run: |
rcmdcheck::rcmdcheck(
args = c("--no-manual", "--as-cran", if (.Platform$OS.type == "windows" && getRversion() >= "4.2.0") "--no-multiarch"),
check_dir = "check"
)
shell: Rscript {0}
- name: Upload check results
if: failure()
uses: actions/upload-artifact@v4
with:
name: ${{ runner.os }}-r${{ matrix.config.r }}-results
path: check