From b279db90a92e62f29060dcf4e3208790fc4d4db4 Mon Sep 17 00:00:00 2001
From: Cade Mirchandani <cademirch@gmail.com>
Date: Thu, 21 May 2026 13:11:43 -0600
Subject: [PATCH 1/2] fix: handle all integer types for hp tags

longcalld writes hp tags as 32bit integers. HP is not in the SAM aux spec so its the wild west i guess
---
 src/fiber.rs | 12 ++++++++----
 1 file changed, 8 insertions(+), 4 deletions(-)

diff --git a/src/fiber.rs b/src/fiber.rs
index b7d3d7dd..5f74a1de 100644
--- a/src/fiber.rs
+++ b/src/fiber.rs
@@ -140,10 +140,14 @@ impl FiberseqData {
     }
 
     pub fn get_hp(&self) -> String {
-        if let Ok(Aux::U8(f)) = self.record.aux(b"HP") {
-            format!("H{f}")
-        } else {
-            "UNK".to_string()
+        match self.record.aux(b"HP") {
+            Ok(Aux::U8(v)) => format!("H{v}"),
+            Ok(Aux::I8(v)) => format!("H{v}"),
+            Ok(Aux::U16(v)) => format!("H{v}"),
+            Ok(Aux::I16(v)) => format!("H{v}"),
+            Ok(Aux::U32(v)) => format!("H{v}"),
+            Ok(Aux::I32(v)) => format!("H{v}"),
+            _ => "UNK".to_string(),
         }
     }
 

From 6fc5553d9f3f7eb5483ef311a792f478b3124335 Mon Sep 17 00:00:00 2001
From: Cade Mirchandani <cademirch@gmail.com>
Date: Thu, 21 May 2026 15:00:58 -0600
Subject: [PATCH 2/2] docs: update changelog

---
 CHANGELOG.md | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 1eea9f59..7babb169 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -2,7 +2,7 @@
 
 All notable changes to this project will be documented in this file.
 
-## [Unreleased]
+## [0.9.0] - 2026-05-21
 
 ### 🚀 New subcommands
 
@@ -20,12 +20,14 @@ All notable changes to this project will be documented in this file.
 ### 🐛 Bug fixes
 
 - **fa:Z extras pairing on reverse-strand reads with overlapping/shared-start peaks (follow-up to #103)**: when multiple BED annotations share a query start position on a reverse-strand read, the post-hoc `ann_vals.reverse()` step in `FiberAnnotations::from_bam_tags` did not produce a permutation equivalent to the stable sort over flipped coordinates, scrambling the fa:Z extras (e.g. peak names/lengths) relative to their fs/fl annotations on extraction. Fix pre-pairs extras with annotations before the flip+sort so the permutation is consistent. BAM encodings were always correct; the bug only affected extraction. Affects v0.8.0–v0.8.2.
+- **`hp` tag parsing accepts all integer widths.** longcalld writes `hp` as a 32-bit integer; the previous code only accepted one width and would error on those reads. `hp` is not in the SAM aux spec, so we now accept any integer type. (#108)
 
 ### 🧪 Tests
 
 - `tests/call_peaks_test.rs`: end-to-end coverage of the new peak caller.
 - `tests/fibertig_test.rs`: regression test for the fa:Z reverse-strand shared-start pairing bug, using Anna Minkina's exact failing input.
 - Unit tests in `src/utils/input_bam.rs` covering `passes_fire_filter` semantics: skip-no-m6a behavior, min-msp, min-ave-msp-size, the `--fire-filter` combo, and explicit-flag overrides.
+- **Regression test harness via `insta` snapshots** (`tests/regression/`, #106). Covers `ft extract --m6a/--nuc/--msp/--all`, `ft center`, `ft qc`, `ft pileup`, and `ft fire --extract` against the existing test BAMs. Update workflow documented in `CONTRIBUTING.md`. 
 
 ### ⚡ Performance