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Label cells with B, LP, & LT classes #15
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1-4 hoursThis task will probably take about 1-4 hoursThis task will probably take about 1-4 hourseasy (relatively)This should be a relatively easy concept to grasp or straight forward task to completeThis should be a relatively easy concept to grasp or straight forward task to completegood first issueGood for newcomersGood for newcomers
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1-4 hoursThis task will probably take about 1-4 hoursThis task will probably take about 1-4 hourseasy (relatively)This should be a relatively easy concept to grasp or straight forward task to completeThis should be a relatively easy concept to grasp or straight forward task to completegood first issueGood for newcomersGood for newcomers
Aims
Milestone 1
Find the cell labels (maybe in table on google drive under "Files from Nick")
Label the 9 cells in the trees in Mei's BioPython tutorial notebook
Milestone 2
Add cell labels to fastq, etc. files, so they are easy to bring up when needed during analysis
Background
The aim of this project is to see how the three cell types (Basal, Luminal Progenitor, and Luminal Terminal) cluster.
We have generated fasta files that capture a fraction of the variation between chromosome M gene sequences of 9 cells (link to data01 repo be added soon). We have also generated some lineage trees with those sequences (link to Mei's ...BioPython-Tutorial....ipynb to be added soon). And we have info with cell labels somewhere (table on google drive or maybe in sra?).