diff --git a/workflow/rules/alignment.smk b/workflow/rules/alignment.smk index acf2d4f..f566a36 100644 --- a/workflow/rules/alignment.smk +++ b/workflow/rules/alignment.smk @@ -11,7 +11,7 @@ rule combine_fqs: ), r2=lookup( query=lambda w: f"patient == '{w.patient}' and sample == '{w.sample_type}' and readgroup == '{w.readgroup}'", - cols=["fq1"], + cols=["fq2"], within=units ), output: