Adapt the structural predictions from alphafold (both mono- and multimer) to insert modified amino acids where evidence shows them to be non-standard. To do this, look at all entries in evidence.txt concerning the Protein ID(s) of the prediction where the "Modifications" value is not Unmodified. Then, extract the location of the modified amino acid in the cif-file by locating the peptide within the protein and overwrite the standard amino acid molecules with the modified ones.
Adapt the structural predictions from alphafold (both mono- and multimer) to insert modified amino acids where evidence shows them to be non-standard. To do this, look at all entries in
evidence.txtconcerning the Protein ID(s) of the prediction where the "Modifications" value is notUnmodified. Then, extract the location of the modified amino acid in the cif-file by locating the peptide within the protein and overwrite the standard amino acid molecules with the modified ones.