Issue description
The old PROTzilla version still has an open PR that tried to implement time-series analysis for PROTzilla: cschlaffner/PROTzilla2#526
This PR includes tooling for loading TMT data, displaying time-series data, and applying different regression methods to it. However, there seemed to be some irregularities in how time metadata was handled in plots, which ultimately prevented this PR from merging. It is advised that the original PR is treated as an outline of features, but code is not blindly copied into this repo.
Please think about how to handle different ways in which time can be stored in metadata (e.g., as date, time point, time elapsed, etc.) to ensure the software stays extensible.
As test data, the proteinGroups.txt from this PRIDE repo can be used (as part of this zip file). A metacsv generated based on the supplementary material can be found here.
There's also a bachelor's thesis including images of all plots, which I can provide upon request.
Acceptance Criteria
Issue description
The old PROTzilla version still has an open PR that tried to implement time-series analysis for PROTzilla: cschlaffner/PROTzilla2#526
This PR includes tooling for loading TMT data, displaying time-series data, and applying different regression methods to it. However, there seemed to be some irregularities in how time metadata was handled in plots, which ultimately prevented this PR from merging. It is advised that the original PR is treated as an outline of features, but code is not blindly copied into this repo.
Please think about how to handle different ways in which time can be stored in metadata (e.g., as date, time point, time elapsed, etc.) to ensure the software stays extensible.
As test data, the proteinGroups.txt from this PRIDE repo can be used (as part of this zip file). A metacsv generated based on the supplementary material can be found here.
There's also a bachelor's thesis including images of all plots, which I can provide upon request.
Acceptance Criteria