From d5d6ea305958b0232d3f024f4d0ac5a2c8252fcf Mon Sep 17 00:00:00 2001 From: marcobarilari Date: Sun, 20 Nov 2022 10:12:40 +0100 Subject: [PATCH 01/38] enh initEnv to also have an uninit case --- initEnv.m | 80 ++++++++++++++++++++++++++++++++++++++++--------------- 1 file changed, 59 insertions(+), 21 deletions(-) diff --git a/initEnv.m b/initEnv.m index febf28a..93be1be 100644 --- a/initEnv.m +++ b/initEnv.m @@ -1,18 +1,45 @@ -% -% 1 - Check if version requirements -% are satisfied and the packages are -% are installed/loaded: -% Octave > 4 -% - image -% - optim -% - struct -% - statistics -% -% MATLAB >= R2015b -% -% 2 - Add project to the O/M path - -function initEnv +function initEnv(varargin) + % + % 1 - Check if version requirements are satisfied and the packages are are installed/loaded: + % Octave > 4 + % - image + % - optim + % - struct + % - statistics + % + % MATLAB >= R2015b + % + % 2 - Add project to the O/M path + % + % USAGE:: + % + % initEnv + % initEnv('init') + % initEnv('uninit') + % + % :param action: + % :type action: string + % + % :returns: - :action: (type) (dimension) + % + % Example:: + % + + % (C) Copyright 2022 CPP_BIDS developers + + p = inputParser; + + defaultAction = 'init'; + + addOptional(p, 'action', defaultAction, @ischar); + % addParameter(p, 'verbose', true); + + parse(p, varargin{:}); + + action = p.Results.action; + % verbose = p.Results.verbose; + + % Check Matlab and Octave version octaveVersion = '4.0.3'; matlabVersion = '8.6.0'; @@ -59,7 +86,7 @@ 'Try this in your terminal:', ... ' git submodule update --recursive ']); else - addDependencies(); + addDependencies(action); end disp('Correct matlab/octave versions and added to the path!'); @@ -96,13 +123,24 @@ function tryInstallFromForge(packageName) end -function addDependencies() +function addDependencies(action) pth = fileparts(mfilename('fullpath')); - addpath(fullfile(pth, 'lib', 'CPP_BIDS')); - addpath(genpath(fullfile(pth, 'lib', 'CPP_PTB', 'src'))); - addpath(fullfile(pth, 'subfun')); + + switch lower(action) + + case 'init' + + run(fullfile(pth, 'lib', 'CPP_PTB', 'cpp_ptb')); + run(fullfile(pth, 'lib', 'CPP_BIDS', 'cpp_bids')); + addpath(genpath(fullfile(pth, 'src'))); + + case 'uninit' + + cpp_ptb('uninit') + cpp_bids('uninit') + rmpath(genpath(fullfile(pth, 'src'))); - checkCppBidsDependencies(); + end end From a165b09d63ae6515623bb6738467b836d690b6ca Mon Sep 17 00:00:00 2001 From: marcobarilari Date: Sun, 20 Nov 2022 10:13:04 +0100 Subject: [PATCH 02/38] add at the end the uninit call to initEnv --- mainScript.m | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/mainScript.m b/mainScript.m index 2f3fa11..6ab993a 100644 --- a/mainScript.m +++ b/mainScript.m @@ -11,7 +11,7 @@ end % make sure we got access to all the required functions and inputs -initEnv(); +initEnv('init'); % set and load all the parameters to run the experiment cfg = setParameters; @@ -125,6 +125,8 @@ cleanUp(); + initEnv('uninit'); + catch cleanUp(); From 1e74c751be8ad375fa51a25624ea24a8ada800f0 Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Sun, 20 Nov 2022 09:19:27 +0000 Subject: [PATCH 03/38] [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --- initEnv.m | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/initEnv.m b/initEnv.m index 93be1be..10efd18 100644 --- a/initEnv.m +++ b/initEnv.m @@ -26,7 +26,7 @@ function initEnv(varargin) % % (C) Copyright 2022 CPP_BIDS developers - + p = inputParser; defaultAction = 'init'; @@ -38,7 +38,7 @@ function initEnv(varargin) action = p.Results.action; % verbose = p.Results.verbose; - + % Check Matlab and Octave version octaveVersion = '4.0.3'; @@ -126,19 +126,19 @@ function tryInstallFromForge(packageName) function addDependencies(action) pth = fileparts(mfilename('fullpath')); - + switch lower(action) case 'init' - + run(fullfile(pth, 'lib', 'CPP_PTB', 'cpp_ptb')); run(fullfile(pth, 'lib', 'CPP_BIDS', 'cpp_bids')); addpath(genpath(fullfile(pth, 'src'))); - + case 'uninit' - - cpp_ptb('uninit') - cpp_bids('uninit') + + cpp_ptb('uninit'); + cpp_bids('uninit'); rmpath(genpath(fullfile(pth, 'src'))); end From 423b2f6b40040200e78d375fabfeeaf2bfcb2cff Mon Sep 17 00:00:00 2001 From: Remi Gau Date: Wed, 1 Feb 2023 22:49:27 +0100 Subject: [PATCH 04/38] simplify README --- README.md | 42 ++++++++---------------------------------- notebooks/README.md | 1 - 2 files changed, 8 insertions(+), 35 deletions(-) delete mode 100644 notebooks/README.md diff --git a/README.md b/README.md index 598d19b..30de111 100644 --- a/README.md +++ b/README.md @@ -1,30 +1,17 @@ [![](https://img.shields.io/badge/Octave-CI-blue?logo=Octave&logoColor=white)](https://github.com/cpp-lln-lab/template_PTB_experiment/actions) ![](https://github.com/Remi-gau/template_matlab_analysis/workflows/CI/badge.svg) [![codecov](https://codecov.io/gh/Remi-gau/template_matlab_analysis/branch/master/graph/badge.svg)](https://codecov.io/gh/cpp-lln-lab/template_PTB_experiment) -[![Build Status](https://travis-ci.com/Remi-gau/template_matlab_analysis.svg?branch=master)](https://travis-ci.com/cpp-lln-lab/template_PTB_experiment) -# Template repository for matlab analysis project +# Template repository for psycthoolbox experiment ## Content ```bash ├── .git -│ ├── COMMIT_EDITMSG -│ ├── FETCH_HEAD -│ ├── HEAD -│ ├── ORIG_HEAD -│ ├── branches -│ ├── config -│ ├── description -│ ├── hooks -│ │ ├── pre-commit.sample -│ │ └── pre-push.sample -│ ├── ... -│ └── ... ├── .github # where you put anything github related │ └── workflows # where you define your github actions │ └── moxunit.yml # a yaml file that defines a github action -├── lib # where you put the code from external libraries (mathworks website or other github repositories) +├── lib # external libraries (mathworks website or other github repositories) │ └── README.md ├── src # where you put your code │ ├── README.md @@ -32,39 +19,25 @@ ├── tests # where you put your unit tests | ├── README.md | └── miss_hit.cfg -├── .travis.yml # where you define the continuous integration done by Travis ├── LICENSE ├── README.md -├── requirements.txt # list of python packages used in this repo: to install `pip install -r requirements.txt` +├── requirements.txt # python packages used: to install `pip install -r requirements.txt` ├── miss_hit.cfg # configuration file for the matlab miss hit linter └── initEnv.m # a .m file to set up your project (adds the right folder to the path) ``` -## Keeping your code stylish: miss hit linter - -## Python environment - -More on this -[here](https://the-turing-way.netlify.app/reproducible-research/renv/renv-package.html) - -[Conda cheat sheet](https://docs.conda.io/projects/conda/en/4.6.0/_downloads/52a95608c49671267e40c689e0bc00ca/conda-cheatsheet.pdf) - -## Testing your code - -## Continuous integration - ## How to install and use this template By using the [template PTB experiment repository](https://github.com/cpp-lln-lab/template_PTB_experiment): -you can create a new repository on your github account with all the basic folders, -files and submodules already set up. You only have to then clone the repository -and you are good to go. - +you can create a new repository on your github account with all the basic +folders, files and submodules already set up. You only have to then clone the +repository and you are good to go. ## How to install and run Install + ``` git clone --recurse-submodules https://github.com/your_github_account/the_name_of_your_new_experiment.git ``` @@ -72,6 +45,7 @@ git clone --recurse-submodules https://github.com/your_github_account/the_name_o Set parameters in `setParameters.m` Run + ``` mainScript ``` diff --git a/notebooks/README.md b/notebooks/README.md deleted file mode 100644 index 1237a6d..0000000 --- a/notebooks/README.md +++ /dev/null @@ -1 +0,0 @@ -# Jupyter notebooks From 9a731416ed96687de439391f8bf7d27452f5b65a Mon Sep 17 00:00:00 2001 From: Remi Gau Date: Wed, 1 Feb 2023 23:04:50 +0100 Subject: [PATCH 05/38] update CPP PTB --- lib/CPP_PTB | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/CPP_PTB b/lib/CPP_PTB index c6f3af0..777e04a 160000 --- a/lib/CPP_PTB +++ b/lib/CPP_PTB @@ -1 +1 @@ -Subproject commit c6f3af0d3b81fd5f78ae0fbd5e1788f529033ce0 +Subproject commit 777e04abd7e41a56912d1bbf8ebb34abc6fee862 From 77df7eddb6dbbd4345d51d27a7276bb494f475e7 Mon Sep 17 00:00:00 2001 From: Remi Gau Date: Wed, 1 Feb 2023 23:08:33 +0100 Subject: [PATCH 06/38] update CPP PTB --- lib/CPP_PTB | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/CPP_PTB b/lib/CPP_PTB index 777e04a..44abd72 160000 --- a/lib/CPP_PTB +++ b/lib/CPP_PTB @@ -1 +1 @@ -Subproject commit 777e04abd7e41a56912d1bbf8ebb34abc6fee862 +Subproject commit 44abd726c314658d1782aaba57f56aab19f99f83 From d03163320cb257c3ac08b9a8571d669b0191acff Mon Sep 17 00:00:00 2001 From: Remi Gau Date: Wed, 1 Feb 2023 23:10:32 +0100 Subject: [PATCH 07/38] update CPP PTB --- lib/CPP_PTB | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/CPP_PTB b/lib/CPP_PTB index 44abd72..06fd8eb 160000 --- a/lib/CPP_PTB +++ b/lib/CPP_PTB @@ -1 +1 @@ -Subproject commit 44abd726c314658d1782aaba57f56aab19f99f83 +Subproject commit 06fd8ebbae190c62ac04f4b57953b904a79ad9ef From 79a3b1ff78bb620f42b0b5d45a5894315a4f0cc0 Mon Sep 17 00:00:00 2001 From: Remi-Gau Date: Wed, 1 Feb 2023 22:13:46 +0000 Subject: [PATCH 08/38] Update submodules --- lib/CPP_BIDS | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/CPP_BIDS b/lib/CPP_BIDS index 3a0613e..f814264 160000 --- a/lib/CPP_BIDS +++ b/lib/CPP_BIDS @@ -1 +1 @@ -Subproject commit 3a0613e64b2048db0f4a8b97c26722b691e034df +Subproject commit f814264af94fbfd5a4ef6644abd68f30f90883f2 From 6d2f407f12fb7ee9e6b8c35f4c3ef76125ec8cbd Mon Sep 17 00:00:00 2001 From: Remi-Gau Date: Sat, 1 Apr 2023 00:47:10 +0000 Subject: [PATCH 09/38] Update submodules --- lib/CPP_BIDS | 2 +- lib/CPP_PTB | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/lib/CPP_BIDS b/lib/CPP_BIDS index f814264..3b23869 160000 --- a/lib/CPP_BIDS +++ b/lib/CPP_BIDS @@ -1 +1 @@ -Subproject commit f814264af94fbfd5a4ef6644abd68f30f90883f2 +Subproject commit 3b238692bb960806a53756e392da30dcae996d63 diff --git a/lib/CPP_PTB b/lib/CPP_PTB index 06fd8eb..fdbbfdf 160000 --- a/lib/CPP_PTB +++ b/lib/CPP_PTB @@ -1 +1 @@ -Subproject commit 06fd8ebbae190c62ac04f4b57953b904a79ad9ef +Subproject commit fdbbfdf5b571bc06a0eccef476b22fced8b763ec From bcc3ae280f820d2245d013fca1edd8f8355c3ea2 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Sat, 1 Apr 2023 00:57:23 +0000 Subject: [PATCH 10/38] Bump lib/CPP_PTB from `06fd8eb` to `fdbbfdf` Bumps [lib/CPP_PTB](https://github.com/cpp-lln-lab/CPP_PTB) from `06fd8eb` to `fdbbfdf`. - [Release notes](https://github.com/cpp-lln-lab/CPP_PTB/releases) - [Commits](https://github.com/cpp-lln-lab/CPP_PTB/compare/06fd8ebbae190c62ac04f4b57953b904a79ad9ef...fdbbfdf5b571bc06a0eccef476b22fced8b763ec) --- updated-dependencies: - dependency-name: lib/CPP_PTB dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- lib/CPP_PTB | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/CPP_PTB b/lib/CPP_PTB index 06fd8eb..fdbbfdf 160000 --- a/lib/CPP_PTB +++ b/lib/CPP_PTB @@ -1 +1 @@ -Subproject commit 06fd8ebbae190c62ac04f4b57953b904a79ad9ef +Subproject commit fdbbfdf5b571bc06a0eccef476b22fced8b763ec From 159ee62d592313cb4fd66744d441c16985a945bb Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Sat, 1 Apr 2023 00:57:28 +0000 Subject: [PATCH 11/38] Bump lib/CPP_BIDS from `f814264` to `3b23869` Bumps [lib/CPP_BIDS](https://github.com/cpp-lln-lab/CPP_BIDS) from `f814264` to `3b23869`. - [Release notes](https://github.com/cpp-lln-lab/CPP_BIDS/releases) - [Commits](https://github.com/cpp-lln-lab/CPP_BIDS/compare/f814264af94fbfd5a4ef6644abd68f30f90883f2...3b238692bb960806a53756e392da30dcae996d63) --- updated-dependencies: - dependency-name: lib/CPP_BIDS dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- lib/CPP_BIDS | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/CPP_BIDS b/lib/CPP_BIDS index f814264..3b23869 160000 --- a/lib/CPP_BIDS +++ b/lib/CPP_BIDS @@ -1 +1 @@ -Subproject commit f814264af94fbfd5a4ef6644abd68f30f90883f2 +Subproject commit 3b238692bb960806a53756e392da30dcae996d63 From 89bee5c41802ab7b4df1ed6ddea1d14dfeea2766 Mon Sep 17 00:00:00 2001 From: Remi-Gau Date: Mon, 1 May 2023 00:48:59 +0000 Subject: [PATCH 12/38] Update submodules --- lib/CPP_BIDS | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/CPP_BIDS b/lib/CPP_BIDS index 3b23869..ad68d19 160000 --- a/lib/CPP_BIDS +++ b/lib/CPP_BIDS @@ -1 +1 @@ -Subproject commit 3b238692bb960806a53756e392da30dcae996d63 +Subproject commit ad68d1992bb7e108dfbdb99edc6954b3fdadef03 From c75f2ab303e80b847bbb742395ea4cd6446a7d52 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 1 May 2023 01:00:42 +0000 Subject: [PATCH 13/38] Bump peter-evans/create-pull-request from 4 to 5 Bumps [peter-evans/create-pull-request](https://github.com/peter-evans/create-pull-request) from 4 to 5. - [Release notes](https://github.com/peter-evans/create-pull-request/releases) - [Commits](https://github.com/peter-evans/create-pull-request/compare/v4...v5) --- updated-dependencies: - dependency-name: peter-evans/create-pull-request dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] --- .github/workflows/update_submodules.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/update_submodules.yml b/.github/workflows/update_submodules.yml index 3c6ea53..8478e92 100644 --- a/.github/workflows/update_submodules.yml +++ b/.github/workflows/update_submodules.yml @@ -94,7 +94,7 @@ jobs: # a PR is created using the checkout branch for this workflow # https://github.com/peter-evans/create-pull-request - name: Create Pull-Request - uses: peter-evans/create-pull-request@v4 + uses: peter-evans/create-pull-request@v5 with: commit-message: Update submodules delete-branch: true From 30c2d59089c40261bc2779c6ea9edf9abd7b1ccc Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 1 May 2023 01:01:38 +0000 Subject: [PATCH 14/38] Bump lib/CPP_BIDS from `3b23869` to `ad68d19` Bumps [lib/CPP_BIDS](https://github.com/cpp-lln-lab/CPP_BIDS) from `3b23869` to `ad68d19`. - [Release notes](https://github.com/cpp-lln-lab/CPP_BIDS/releases) - [Commits](https://github.com/cpp-lln-lab/CPP_BIDS/compare/3b238692bb960806a53756e392da30dcae996d63...ad68d1992bb7e108dfbdb99edc6954b3fdadef03) --- updated-dependencies: - dependency-name: lib/CPP_BIDS dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- lib/CPP_BIDS | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/CPP_BIDS b/lib/CPP_BIDS index 3b23869..ad68d19 160000 --- a/lib/CPP_BIDS +++ b/lib/CPP_BIDS @@ -1 +1 @@ -Subproject commit 3b238692bb960806a53756e392da30dcae996d63 +Subproject commit ad68d1992bb7e108dfbdb99edc6954b3fdadef03 From be25a4936780813112a94556eecf976f1775f83f Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Thu, 1 Jun 2023 00:57:24 +0000 Subject: [PATCH 15/38] Bump lib/CPP_BIDS from `ad68d19` to `31606c3` Bumps [lib/CPP_BIDS](https://github.com/cpp-lln-lab/CPP_BIDS) from `ad68d19` to `31606c3`. - [Release notes](https://github.com/cpp-lln-lab/CPP_BIDS/releases) - [Commits](https://github.com/cpp-lln-lab/CPP_BIDS/compare/ad68d1992bb7e108dfbdb99edc6954b3fdadef03...31606c3cc6af456edfc2988792493d3886270f20) --- updated-dependencies: - dependency-name: lib/CPP_BIDS dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- lib/CPP_BIDS | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/CPP_BIDS b/lib/CPP_BIDS index ad68d19..31606c3 160000 --- a/lib/CPP_BIDS +++ b/lib/CPP_BIDS @@ -1 +1 @@ -Subproject commit ad68d1992bb7e108dfbdb99edc6954b3fdadef03 +Subproject commit 31606c3cc6af456edfc2988792493d3886270f20 From bbeba4a17719bd5cf5e8922a131c117739a17146 Mon Sep 17 00:00:00 2001 From: Remi-Gau Date: Thu, 1 Jun 2023 01:03:49 +0000 Subject: [PATCH 16/38] Update submodules --- lib/CPP_BIDS | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/CPP_BIDS b/lib/CPP_BIDS index ad68d19..31606c3 160000 --- a/lib/CPP_BIDS +++ b/lib/CPP_BIDS @@ -1 +1 @@ -Subproject commit ad68d1992bb7e108dfbdb99edc6954b3fdadef03 +Subproject commit 31606c3cc6af456edfc2988792493d3886270f20 From 394f01828bd429069a5b1e8cab710d6053fe5de5 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Sat, 1 Jul 2023 00:50:31 +0000 Subject: [PATCH 17/38] Bump lib/CPP_BIDS from `31606c3` to `28477b4` Bumps [lib/CPP_BIDS](https://github.com/cpp-lln-lab/CPP_BIDS) from `31606c3` to `28477b4`. - [Release notes](https://github.com/cpp-lln-lab/CPP_BIDS/releases) - [Commits](https://github.com/cpp-lln-lab/CPP_BIDS/compare/31606c3cc6af456edfc2988792493d3886270f20...28477b419ab716cec8391e3b58898041ae7cc2bb) --- updated-dependencies: - dependency-name: lib/CPP_BIDS dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- lib/CPP_BIDS | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/CPP_BIDS b/lib/CPP_BIDS index 31606c3..28477b4 160000 --- a/lib/CPP_BIDS +++ b/lib/CPP_BIDS @@ -1 +1 @@ -Subproject commit 31606c3cc6af456edfc2988792493d3886270f20 +Subproject commit 28477b419ab716cec8391e3b58898041ae7cc2bb From 6e66984b3305f14e44a46b875b30fb8d12d5bfc0 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Tue, 1 Aug 2023 00:32:08 +0000 Subject: [PATCH 18/38] Bump lib/CPP_BIDS from `28477b4` to `0bb91e7` Bumps [lib/CPP_BIDS](https://github.com/cpp-lln-lab/CPP_BIDS) from `28477b4` to `0bb91e7`. - [Release notes](https://github.com/cpp-lln-lab/CPP_BIDS/releases) - [Commits](https://github.com/cpp-lln-lab/CPP_BIDS/compare/28477b419ab716cec8391e3b58898041ae7cc2bb...0bb91e7238d6123634396a3af40d1611624c76aa) --- updated-dependencies: - dependency-name: lib/CPP_BIDS dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- lib/CPP_BIDS | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/CPP_BIDS b/lib/CPP_BIDS index 28477b4..0bb91e7 160000 --- a/lib/CPP_BIDS +++ b/lib/CPP_BIDS @@ -1 +1 @@ -Subproject commit 28477b419ab716cec8391e3b58898041ae7cc2bb +Subproject commit 0bb91e7238d6123634396a3af40d1611624c76aa From f1f49f7593525cb13316cce02fa321f30371c9f8 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Fri, 1 Sep 2023 00:12:52 +0000 Subject: [PATCH 19/38] Bump lib/CPP_BIDS from `0bb91e7` to `c76f332` Bumps [lib/CPP_BIDS](https://github.com/cpp-lln-lab/CPP_BIDS) from `0bb91e7` to `c76f332`. - [Release notes](https://github.com/cpp-lln-lab/CPP_BIDS/releases) - [Commits](https://github.com/cpp-lln-lab/CPP_BIDS/compare/0bb91e7238d6123634396a3af40d1611624c76aa...c76f332d707ea2ef3f7d893435b91071e2c3ee70) --- updated-dependencies: - dependency-name: lib/CPP_BIDS dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- lib/CPP_BIDS | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/CPP_BIDS b/lib/CPP_BIDS index 0bb91e7..c76f332 160000 --- a/lib/CPP_BIDS +++ b/lib/CPP_BIDS @@ -1 +1 @@ -Subproject commit 0bb91e7238d6123634396a3af40d1611624c76aa +Subproject commit c76f332d707ea2ef3f7d893435b91071e2c3ee70 From c74989598aad739417105afaf838985e3ab63f02 Mon Sep 17 00:00:00 2001 From: Remi-Gau Date: Fri, 1 Sep 2023 00:41:27 +0000 Subject: [PATCH 20/38] Update submodules --- lib/CPP_BIDS | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/CPP_BIDS b/lib/CPP_BIDS index 0bb91e7..c76f332 160000 --- a/lib/CPP_BIDS +++ b/lib/CPP_BIDS @@ -1 +1 @@ -Subproject commit 0bb91e7238d6123634396a3af40d1611624c76aa +Subproject commit c76f332d707ea2ef3f7d893435b91071e2c3ee70 From b95ad43720c313bccf1ab9ee4274c1a87973a7b0 Mon Sep 17 00:00:00 2001 From: Remi Gau Date: Fri, 1 Sep 2023 11:50:06 -0400 Subject: [PATCH 21/38] rem worklfow to upate submodules --- .github/workflows/update_submodules.yml | 100 ------------------------ 1 file changed, 100 deletions(-) delete mode 100644 .github/workflows/update_submodules.yml diff --git a/.github/workflows/update_submodules.yml b/.github/workflows/update_submodules.yml deleted file mode 100644 index 8478e92..0000000 --- a/.github/workflows/update_submodules.yml +++ /dev/null @@ -1,100 +0,0 @@ -name: update submodules - -# requires sudmodules URL to be "https..." (no ssh) -# -# requires submodule to be specified to follow a specific branch (stored in .gitmodules) -# -# clone them with: -# -# git submodule add -b branch_to_follow https://github.com/... submodule_path -# -# or specify it with: -# -# git config -f .gitmodules submodule.submodule_path.branch branch_to_follow -# - - # Uses the cron schedule for github actions - # - # https://docs.github.com/en/free-pro-team@latest/actions/reference/events-that-trigger-workflows#scheduled-events - # - # ┌───────────── minute (0 - 59) - # │ ┌───────────── hour (0 - 23) - # │ │ ┌───────────── day of the month (1 - 31) - # │ │ │ ┌───────────── month (1 - 12 or JAN-DEC) - # │ │ │ │ ┌───────────── day of the week (0 - 6 or SUN-SAT) - # │ │ │ │ │ - # │ │ │ │ │ - # │ │ │ │ │ - # * * * * * - -on: - push: - branches: - - main - - master - - dev - schedule: - - cron: "0 0 1 * *" - - # to trigger update manually from the Action tab in github - workflow_dispatch: - inputs: - log: - description: "Log" - required: false - -env: - # to update all submodules - SUBMOD_TO_UPDATE: "*" - # otherwise use a space separated list of the relative paths of each submodule to update - # SUBMOD_TO_UPDATE: "lib/sub_3 lib/sub_1" - -defaults: - run: - shell: bash - -jobs: - update_submodules: - # only trigger update on upstream repo - if: github.repository_owner == 'cpp-lln-lab' - - runs-on: ubuntu-latest - - steps: - - - name: Clone repo - uses: actions/checkout@v3 - with: - submodules: true - - # check out the correct branch for each submodule and pull them all - # https://stackoverflow.com/questions/5828324/update-git-submodule-to-latest-commit-on-origin - - name: Update submodules - run: | - start_dir=$PWD - if [ "${SUBMOD_TO_UPDATE}" = "*" ]; then - submodules=$(git submodule | awk '{print $2}') - else - submodules=$(echo -e ${SUBMOD_TO_UPDATE} | sed "s/ /\n/g") - fi - nb_submod=$(echo "${submodules}" | wc -l) - echo -e "\nUPDATING ${nb_submod} SUBMODULES" - echo -e "${submodules}" - for i in $(seq 1 ${nb_submod}); do - path=$(echo -e ${submodules} | awk -v i=${i} '{print $i}') - branch=$(git config --get --file .gitmodules submodule.${path}.branch) - echo -e "\nswitching submodule ${path} to ${branch}" - cd "${path}" || exit - git checkout ${branch} - cd "${start_dir}" - done - git submodule update --remote --merge - - # if there have been changes, - # a PR is created using the checkout branch for this workflow - # https://github.com/peter-evans/create-pull-request - - name: Create Pull-Request - uses: peter-evans/create-pull-request@v5 - with: - commit-message: Update submodules - delete-branch: true From cd613fd475cf8f5ca6d4e7eadd54db4013c9b471 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Sun, 1 Oct 2023 00:06:56 +0000 Subject: [PATCH 22/38] Bump actions/checkout from 3 to 4 Bumps [actions/checkout](https://github.com/actions/checkout) from 3 to 4. - [Release notes](https://github.com/actions/checkout/releases) - [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md) - [Commits](https://github.com/actions/checkout/compare/v3...v4) --- updated-dependencies: - dependency-name: actions/checkout dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] --- .github/workflows/codespell.yml | 2 +- .github/workflows/miss_hit_quality.yml | 2 +- .github/workflows/miss_hit_style.yml | 2 +- .github/workflows/moxunit.yml | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) diff --git a/.github/workflows/codespell.yml b/.github/workflows/codespell.yml index b7ab6ff..9df712a 100644 --- a/.github/workflows/codespell.yml +++ b/.github/workflows/codespell.yml @@ -15,5 +15,5 @@ jobs: codespell: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 - uses: codespell-project/actions-codespell@master diff --git a/.github/workflows/miss_hit_quality.yml b/.github/workflows/miss_hit_quality.yml index 7fab7fd..0d0bfb2 100644 --- a/.github/workflows/miss_hit_quality.yml +++ b/.github/workflows/miss_hit_quality.yml @@ -10,7 +10,7 @@ jobs: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 with: submodules: true fetch-depth: 1 diff --git a/.github/workflows/miss_hit_style.yml b/.github/workflows/miss_hit_style.yml index 9a4ae4a..9cadbe5 100644 --- a/.github/workflows/miss_hit_style.yml +++ b/.github/workflows/miss_hit_style.yml @@ -10,7 +10,7 @@ jobs: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 with: submodules: true fetch-depth: 1 diff --git a/.github/workflows/moxunit.yml b/.github/workflows/moxunit.yml index 81e395b..b799ab5 100644 --- a/.github/workflows/moxunit.yml +++ b/.github/workflows/moxunit.yml @@ -14,7 +14,7 @@ jobs: steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 with: submodules: true fetch-depth: 1 From 7c8acab74bd56ea4f06c15eaee4988bc54f69406 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Sun, 1 Oct 2023 00:28:13 +0000 Subject: [PATCH 23/38] Bump lib/CPP_BIDS from `c76f332` to `b71aceb` Bumps [lib/CPP_BIDS](https://github.com/cpp-lln-lab/CPP_BIDS) from `c76f332` to `b71aceb`. - [Release notes](https://github.com/cpp-lln-lab/CPP_BIDS/releases) - [Commits](https://github.com/cpp-lln-lab/CPP_BIDS/compare/c76f332d707ea2ef3f7d893435b91071e2c3ee70...b71aceb379168dd0e268e4681ca46ae5bb1adf3b) --- updated-dependencies: - dependency-name: lib/CPP_BIDS dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- lib/CPP_BIDS | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/CPP_BIDS b/lib/CPP_BIDS index c76f332..b71aceb 160000 --- a/lib/CPP_BIDS +++ b/lib/CPP_BIDS @@ -1 +1 @@ -Subproject commit c76f332d707ea2ef3f7d893435b91071e2c3ee70 +Subproject commit b71aceb379168dd0e268e4681ca46ae5bb1adf3b From 9b6da82f9ced44ae1757e892288041c64e695b35 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Wed, 1 Nov 2023 00:26:43 +0000 Subject: [PATCH 24/38] Bump lib/CPP_BIDS from `b71aceb` to `7c37c29` Bumps [lib/CPP_BIDS](https://github.com/cpp-lln-lab/CPP_BIDS) from `b71aceb` to `7c37c29`. - [Release notes](https://github.com/cpp-lln-lab/CPP_BIDS/releases) - [Commits](https://github.com/cpp-lln-lab/CPP_BIDS/compare/b71aceb379168dd0e268e4681ca46ae5bb1adf3b...7c37c29f324cdd0bd18a84724a6010c8b9ba8474) --- updated-dependencies: - dependency-name: lib/CPP_BIDS dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- lib/CPP_BIDS | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/CPP_BIDS b/lib/CPP_BIDS index b71aceb..7c37c29 160000 --- a/lib/CPP_BIDS +++ b/lib/CPP_BIDS @@ -1 +1 @@ -Subproject commit b71aceb379168dd0e268e4681ca46ae5bb1adf3b +Subproject commit 7c37c29f324cdd0bd18a84724a6010c8b9ba8474 From 6a320e3e425d2c4107eed62386b60e6abd8e2e27 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Wed, 1 Nov 2023 00:26:46 +0000 Subject: [PATCH 25/38] Bump lib/CPP_PTB from `fdbbfdf` to `378dcd8` Bumps [lib/CPP_PTB](https://github.com/cpp-lln-lab/CPP_PTB) from `fdbbfdf` to `378dcd8`. - [Release notes](https://github.com/cpp-lln-lab/CPP_PTB/releases) - [Commits](https://github.com/cpp-lln-lab/CPP_PTB/compare/fdbbfdf5b571bc06a0eccef476b22fced8b763ec...378dcd84696efd9357d20f30888c964489e897a3) --- updated-dependencies: - dependency-name: lib/CPP_PTB dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- lib/CPP_PTB | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/CPP_PTB b/lib/CPP_PTB index fdbbfdf..378dcd8 160000 --- a/lib/CPP_PTB +++ b/lib/CPP_PTB @@ -1 +1 @@ -Subproject commit fdbbfdf5b571bc06a0eccef476b22fced8b763ec +Subproject commit 378dcd84696efd9357d20f30888c964489e897a3 From f096cdefac6b21a398c492969ce0c3f95f55b543 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Fri, 1 Dec 2023 00:04:11 +0000 Subject: [PATCH 26/38] Bump lib/CPP_BIDS from `7c37c29` to `72be3fa` Bumps [lib/CPP_BIDS](https://github.com/cpp-lln-lab/CPP_BIDS) from `7c37c29` to `72be3fa`. - [Release notes](https://github.com/cpp-lln-lab/CPP_BIDS/releases) - [Commits](https://github.com/cpp-lln-lab/CPP_BIDS/compare/7c37c29f324cdd0bd18a84724a6010c8b9ba8474...72be3fa371379dc79c52719d57601b9da47776be) --- updated-dependencies: - dependency-name: lib/CPP_BIDS dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- lib/CPP_BIDS | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/CPP_BIDS b/lib/CPP_BIDS index 7c37c29..72be3fa 160000 --- a/lib/CPP_BIDS +++ b/lib/CPP_BIDS @@ -1 +1 @@ -Subproject commit 7c37c29f324cdd0bd18a84724a6010c8b9ba8474 +Subproject commit 72be3fa371379dc79c52719d57601b9da47776be From 7c0a5af203ac972bb0f8130f31563c7457a6ef78 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 1 Jan 2024 00:01:58 +0000 Subject: [PATCH 27/38] Bump lib/CPP_PTB from `378dcd8` to `48540ec` Bumps [lib/CPP_PTB](https://github.com/cpp-lln-lab/CPP_PTB) from `378dcd8` to `48540ec`. - [Release notes](https://github.com/cpp-lln-lab/CPP_PTB/releases) - [Commits](https://github.com/cpp-lln-lab/CPP_PTB/compare/378dcd84696efd9357d20f30888c964489e897a3...48540ec8c63749e5c286866e64c6baefbaef4a4f) --- updated-dependencies: - dependency-name: lib/CPP_PTB dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- lib/CPP_PTB | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/CPP_PTB b/lib/CPP_PTB index 378dcd8..48540ec 160000 --- a/lib/CPP_PTB +++ b/lib/CPP_PTB @@ -1 +1 @@ -Subproject commit 378dcd84696efd9357d20f30888c964489e897a3 +Subproject commit 48540ec8c63749e5c286866e64c6baefbaef4a4f From cf94289974b97503c7f9059eb768cee749725f88 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 1 Jan 2024 00:02:01 +0000 Subject: [PATCH 28/38] Bump lib/CPP_BIDS from `72be3fa` to `4c75747` Bumps [lib/CPP_BIDS](https://github.com/cpp-lln-lab/CPP_BIDS) from `72be3fa` to `4c75747`. - [Release notes](https://github.com/cpp-lln-lab/CPP_BIDS/releases) - [Commits](https://github.com/cpp-lln-lab/CPP_BIDS/compare/72be3fa371379dc79c52719d57601b9da47776be...4c75747b8b37ca8b13f1fc719e7b1308b15d13c3) --- updated-dependencies: - dependency-name: lib/CPP_BIDS dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- lib/CPP_BIDS | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/CPP_BIDS b/lib/CPP_BIDS index 72be3fa..4c75747 160000 --- a/lib/CPP_BIDS +++ b/lib/CPP_BIDS @@ -1 +1 @@ -Subproject commit 72be3fa371379dc79c52719d57601b9da47776be +Subproject commit 4c75747b8b37ca8b13f1fc719e7b1308b15d13c3 From 9e761cdcfd1d1d48b393e10bf022acd5aa3cce2d Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 1 Jan 2024 00:48:37 +0000 Subject: [PATCH 29/38] Bump actions/setup-python from 4 to 5 Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4 to 5. - [Release notes](https://github.com/actions/setup-python/releases) - [Commits](https://github.com/actions/setup-python/compare/v4...v5) --- updated-dependencies: - dependency-name: actions/setup-python dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] --- .github/workflows/miss_hit_quality.yml | 2 +- .github/workflows/miss_hit_style.yml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/miss_hit_quality.yml b/.github/workflows/miss_hit_quality.yml index 0d0bfb2..a1f8337 100644 --- a/.github/workflows/miss_hit_quality.yml +++ b/.github/workflows/miss_hit_quality.yml @@ -16,7 +16,7 @@ jobs: fetch-depth: 1 - name: Set up Python - uses: actions/setup-python@v4 + uses: actions/setup-python@v5 with: python-version: 3.11 diff --git a/.github/workflows/miss_hit_style.yml b/.github/workflows/miss_hit_style.yml index 9cadbe5..f20d275 100644 --- a/.github/workflows/miss_hit_style.yml +++ b/.github/workflows/miss_hit_style.yml @@ -16,7 +16,7 @@ jobs: fetch-depth: 1 - name: Set up Python - uses: actions/setup-python@v4 + uses: actions/setup-python@v5 with: python-version: 3.11 From 4e39911dfcc693688eaa5a1845a15192735b2db4 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Thu, 1 Feb 2024 00:23:43 +0000 Subject: [PATCH 30/38] Bump lib/CPP_BIDS from `4c75747` to `19f086c` Bumps [lib/CPP_BIDS](https://github.com/cpp-lln-lab/CPP_BIDS) from `4c75747` to `19f086c`. - [Release notes](https://github.com/cpp-lln-lab/CPP_BIDS/releases) - [Commits](https://github.com/cpp-lln-lab/CPP_BIDS/compare/4c75747b8b37ca8b13f1fc719e7b1308b15d13c3...19f086ce65ebd49afc70efe846bb35ff274d716e) --- updated-dependencies: - dependency-name: lib/CPP_BIDS dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- lib/CPP_BIDS | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/CPP_BIDS b/lib/CPP_BIDS index 4c75747..19f086c 160000 --- a/lib/CPP_BIDS +++ b/lib/CPP_BIDS @@ -1 +1 @@ -Subproject commit 4c75747b8b37ca8b13f1fc719e7b1308b15d13c3 +Subproject commit 19f086ce65ebd49afc70efe846bb35ff274d716e From 88fdbe5660870e3a8bf3ea35e3926ddbb4a748a5 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Thu, 1 Feb 2024 00:59:30 +0000 Subject: [PATCH 31/38] Bump codecov/codecov-action from 3 to 4 Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 3 to 4. - [Release notes](https://github.com/codecov/codecov-action/releases) - [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md) - [Commits](https://github.com/codecov/codecov-action/compare/v3...v4) --- updated-dependencies: - dependency-name: codecov/codecov-action dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] --- .github/workflows/moxunit.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/moxunit.yml b/.github/workflows/moxunit.yml index b799ab5..a3f2655 100644 --- a/.github/workflows/moxunit.yml +++ b/.github/workflows/moxunit.yml @@ -28,7 +28,7 @@ jobs: cover_xml_file: coverage.xml - name: Code coverage - uses: codecov/codecov-action@v3 + uses: codecov/codecov-action@v4 with: token: ${{ secrets.CODECOV_TOKEN }} # not required for public repos file: coverage.xml # optional From dd73b3e84d14e6203116f53d36fd8bb6f28d51e6 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Fri, 1 Mar 2024 00:51:31 +0000 Subject: [PATCH 32/38] Bump lib/CPP_BIDS from `19f086c` to `3b95c4f` Bumps [lib/CPP_BIDS](https://github.com/cpp-lln-lab/CPP_BIDS) from `19f086c` to `3b95c4f`. - [Release notes](https://github.com/cpp-lln-lab/CPP_BIDS/releases) - [Commits](https://github.com/cpp-lln-lab/CPP_BIDS/compare/19f086ce65ebd49afc70efe846bb35ff274d716e...3b95c4fbe891bdac90223bc4c173ae1873308e41) --- updated-dependencies: - dependency-name: lib/CPP_BIDS dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- lib/CPP_BIDS | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/CPP_BIDS b/lib/CPP_BIDS index 19f086c..3b95c4f 160000 --- a/lib/CPP_BIDS +++ b/lib/CPP_BIDS @@ -1 +1 @@ -Subproject commit 19f086ce65ebd49afc70efe846bb35ff274d716e +Subproject commit 3b95c4fbe891bdac90223bc4c173ae1873308e41 From 726ac601971ade22a9c95e8bc363093bccac5554 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Fri, 1 Mar 2024 00:51:34 +0000 Subject: [PATCH 33/38] Bump lib/CPP_PTB from `48540ec` to `ed00ab9` Bumps [lib/CPP_PTB](https://github.com/cpp-lln-lab/CPP_PTB) from `48540ec` to `ed00ab9`. - [Release notes](https://github.com/cpp-lln-lab/CPP_PTB/releases) - [Commits](https://github.com/cpp-lln-lab/CPP_PTB/compare/48540ec8c63749e5c286866e64c6baefbaef4a4f...ed00ab9af261cde18854ddd5a03d889e7ad4f2d1) --- updated-dependencies: - dependency-name: lib/CPP_PTB dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- lib/CPP_PTB | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/CPP_PTB b/lib/CPP_PTB index 48540ec..ed00ab9 160000 --- a/lib/CPP_PTB +++ b/lib/CPP_PTB @@ -1 +1 @@ -Subproject commit 48540ec8c63749e5c286866e64c6baefbaef4a4f +Subproject commit ed00ab9af261cde18854ddd5a03d889e7ad4f2d1 From 75c29f04917699b2e09331b1487624494f1b0c56 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 1 Apr 2024 01:19:25 +0000 Subject: [PATCH 34/38] Bump lib/CPP_BIDS from `3b95c4f` to `eeb0ad7` Bumps [lib/CPP_BIDS](https://github.com/cpp-lln-lab/CPP_BIDS) from `3b95c4f` to `eeb0ad7`. - [Release notes](https://github.com/cpp-lln-lab/CPP_BIDS/releases) - [Commits](https://github.com/cpp-lln-lab/CPP_BIDS/compare/3b95c4fbe891bdac90223bc4c173ae1873308e41...eeb0ad78d9e968efaa3ce57ecbe276484fe3a3bb) --- updated-dependencies: - dependency-name: lib/CPP_BIDS dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- lib/CPP_BIDS | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/CPP_BIDS b/lib/CPP_BIDS index 3b95c4f..eeb0ad7 160000 --- a/lib/CPP_BIDS +++ b/lib/CPP_BIDS @@ -1 +1 @@ -Subproject commit 3b95c4fbe891bdac90223bc4c173ae1873308e41 +Subproject commit eeb0ad78d9e968efaa3ce57ecbe276484fe3a3bb From 9a3c1922b4e8784490c9dce02d15455d62c28176 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Wed, 1 May 2024 11:51:22 +0200 Subject: [PATCH 35/38] Bump lib/CPP_BIDS from `eeb0ad7` to `8536d1c` (#70) Bumps [lib/CPP_BIDS](https://github.com/cpp-lln-lab/CPP_BIDS) from `eeb0ad7` to `8536d1c`. - [Release notes](https://github.com/cpp-lln-lab/CPP_BIDS/releases) - [Commits](https://github.com/cpp-lln-lab/CPP_BIDS/compare/eeb0ad78d9e968efaa3ce57ecbe276484fe3a3bb...8536d1cf4c6ca379a2b77feff5b35a94ed9dc317) --- updated-dependencies: - dependency-name: lib/CPP_BIDS dependency-type: direct:production ... Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- lib/CPP_BIDS | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/CPP_BIDS b/lib/CPP_BIDS index eeb0ad7..8536d1c 160000 --- a/lib/CPP_BIDS +++ b/lib/CPP_BIDS @@ -1 +1 @@ -Subproject commit eeb0ad78d9e968efaa3ce57ecbe276484fe3a3bb +Subproject commit 8536d1cf4c6ca379a2b77feff5b35a94ed9dc317 From 633f2def8fc14eb4370adf80991a91d853cdbe6d Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Wed, 1 May 2024 11:51:34 +0200 Subject: [PATCH 36/38] Bump lib/CPP_PTB from `ed00ab9` to `b5dcdff` (#71) Bumps [lib/CPP_PTB](https://github.com/cpp-lln-lab/CPP_PTB) from `ed00ab9` to `b5dcdff`. - [Release notes](https://github.com/cpp-lln-lab/CPP_PTB/releases) - [Commits](https://github.com/cpp-lln-lab/CPP_PTB/compare/ed00ab9af261cde18854ddd5a03d889e7ad4f2d1...b5dcdff754cfc77706f36f9f6416be09ef43f463) --- updated-dependencies: - dependency-name: lib/CPP_PTB dependency-type: direct:production ... Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- lib/CPP_PTB | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/CPP_PTB b/lib/CPP_PTB index ed00ab9..b5dcdff 160000 --- a/lib/CPP_PTB +++ b/lib/CPP_PTB @@ -1 +1 @@ -Subproject commit ed00ab9af261cde18854ddd5a03d889e7ad4f2d1 +Subproject commit b5dcdff754cfc77706f36f9f6416be09ef43f463 From e91689cbaa73fda98be1aa7a1c2308bbd7547e3c Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Sun, 2 Feb 2025 14:15:57 +0100 Subject: [PATCH 37/38] Bump codecov/codecov-action from 4 to 5 (#72) Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 4 to 5. - [Release notes](https://github.com/codecov/codecov-action/releases) - [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md) - [Commits](https://github.com/codecov/codecov-action/compare/v4...v5) --- updated-dependencies: - dependency-name: codecov/codecov-action dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- .github/workflows/moxunit.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/moxunit.yml b/.github/workflows/moxunit.yml index a3f2655..2ba9df2 100644 --- a/.github/workflows/moxunit.yml +++ b/.github/workflows/moxunit.yml @@ -28,7 +28,7 @@ jobs: cover_xml_file: coverage.xml - name: Code coverage - uses: codecov/codecov-action@v4 + uses: codecov/codecov-action@v5 with: token: ${{ secrets.CODECOV_TOKEN }} # not required for public repos file: coverage.xml # optional From 736acb385af7ee2f51daffd45fa6786d7c8c2782 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Fri, 27 Feb 2026 01:27:31 +0000 Subject: [PATCH 38/38] Bump actions/checkout from 4 to 6 Bumps [actions/checkout](https://github.com/actions/checkout) from 4 to 6. - [Release notes](https://github.com/actions/checkout/releases) - [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md) - [Commits](https://github.com/actions/checkout/compare/v4...v6) --- updated-dependencies: - dependency-name: actions/checkout dependency-version: '6' dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] --- .github/workflows/codespell.yml | 2 +- .github/workflows/miss_hit_quality.yml | 2 +- .github/workflows/miss_hit_style.yml | 2 +- .github/workflows/moxunit.yml | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) diff --git a/.github/workflows/codespell.yml b/.github/workflows/codespell.yml index 9df712a..339fc94 100644 --- a/.github/workflows/codespell.yml +++ b/.github/workflows/codespell.yml @@ -15,5 +15,5 @@ jobs: codespell: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v4 + - uses: actions/checkout@v6 - uses: codespell-project/actions-codespell@master diff --git a/.github/workflows/miss_hit_quality.yml b/.github/workflows/miss_hit_quality.yml index a1f8337..2bfbc74 100644 --- a/.github/workflows/miss_hit_quality.yml +++ b/.github/workflows/miss_hit_quality.yml @@ -10,7 +10,7 @@ jobs: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v4 + - uses: actions/checkout@v6 with: submodules: true fetch-depth: 1 diff --git a/.github/workflows/miss_hit_style.yml b/.github/workflows/miss_hit_style.yml index f20d275..594b3c5 100644 --- a/.github/workflows/miss_hit_style.yml +++ b/.github/workflows/miss_hit_style.yml @@ -10,7 +10,7 @@ jobs: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v4 + - uses: actions/checkout@v6 with: submodules: true fetch-depth: 1 diff --git a/.github/workflows/moxunit.yml b/.github/workflows/moxunit.yml index 2ba9df2..81fc93a 100644 --- a/.github/workflows/moxunit.yml +++ b/.github/workflows/moxunit.yml @@ -14,7 +14,7 @@ jobs: steps: - - uses: actions/checkout@v4 + - uses: actions/checkout@v6 with: submodules: true fetch-depth: 1