Hi,
after some tests on the cluster, I found a combination of parameters that allows to preprocess a session in around 10 hours Session = anatomical + 14 runs of functional (2 localizers, 12 mvpa runs).
I would suggest changing the example parameters in src/UCLouvain/fmriprep_example.slurm
The parameters I used are the following:
#SBATCH --ntasks=1
#SBATCH --cpus-per-task=4
#SBATCH --mem-per-cpu=20000 # megabytes
#SBATCH --partition=batch,debug
[...]
export OMP_NUM_THREADS=4
export MKL_NUM_THREADS=4
It seems that a number of threads and cores above 4 is not accepted.
Using the script generator wizard, they seem to not be accepted by our cluster (Lemaitre3).
Let me know if more data is needed.
Thanks
Hi,
after some tests on the cluster, I found a combination of parameters that allows to preprocess a session in around 10 hours Session = anatomical + 14 runs of functional (2 localizers, 12 mvpa runs).
I would suggest changing the example parameters in
src/UCLouvain/fmriprep_example.slurmThe parameters I used are the following:
[...]
It seems that a number of threads and cores above 4 is not accepted.
Using the script generator wizard, they seem to not be accepted by our cluster (Lemaitre3).
Let me know if more data is needed.
Thanks