SingleCellOpenProblems/.github/workflows/pre-commit.yml at master · cbravo93/SingleCellOpenProblems · GitHub

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name: pre-commit
on:
  push:
    branches-ignore:
      - 'master'
  pull_request:
    types: [opened, synchronize, reopened, ready_for_review]

jobs:
  pre-commit:
    runs-on: ubuntu-18.04
    if: >-
      !contains(github.event.head_commit.message, 'ci skip') &&
      (
        startsWith(github.ref, 'refs/heads') ||
        github.event.pull_request.draft == false
      )

    steps:
      - name: Cancel Previous Runs
        uses: styfle/cancel-workflow-action@0.6.0
        with:
          access_token: ${{ github.token }}
      - uses: actions/checkout@v2
        with:
          fetch-depth: 0

      - name: Install system dependencies
        if: runner.os == 'Linux'
        run: |
          sudo apt-get update -qq || (sudo rm /etc/apt/sources.list.d/* && sudo apt-get update -yqq)
          sudo apt-get install -y libcurl4-openssl-dev

      - name: Set up Python
        uses: actions/setup-python@v2
        with:
          python-version: "3.8"
          architecture: "x64"

      - name: Set up environment
        run: |
          echo "UBUNTU_VERSION=`grep DISTRIB_RELEASE /etc/lsb-release | sed 's/.*=//g'`" >> $GITHUB_ENV
          mkdir -p .local/R/site-packages
          echo "R_LIBS_USER=`pwd`/.local/R/site-packages" >> $GITHUB_ENV

      - name: Cache R packages
        uses: actions/cache@v2
        if: startsWith(runner.os, 'Linux')
        with:
          path: ${{env.R_LIBS_USER}}
          key: precommit-${{env.UBUNTU_VERSION}}-renv-${{ hashFiles('.pre-commit.r_requirements.txt') }}-
          restore-keys: |
            precommit-${{env.UBUNTU_VERSION}}-renv-

      - name: Install R packages
        run: |
          if (!requireNamespace("renv", quietly = TRUE)) install.packages("renv")
          renv::restore()
          renv::install(scan(".pre-commit.r_requirements.txt", what=character(), sep="\n"))
        shell: Rscript {0}

      - name: Cache pre-commit
        uses: actions/cache@v2
        with:
          path: ~/.cache/pre-commit
          key: pre-commit-${{ hashFiles('.pre-commit-config.yaml') }}-

      - name: Run pre-commit
        uses: pre-commit/action@v2.0.0

      - name: Commit files
        if: failure() && startsWith(github.ref, 'refs/heads')
        run: |
          if [[ `git status --porcelain --untracked-files=no` ]]; then
            git config --local user.email "41898282+github-actions[bot]@users.noreply.github.com"
            git config --local user.name "github-actions[bot]"
            git checkout -- .github/workflows
            git commit -m "pre-commit" -a
          fi

      - name: Push changes
        if: failure() && startsWith(github.ref, 'refs/heads')
        uses: ad-m/github-push-action@master
        with:
          github_token: ${{ secrets.GITHUB_TOKEN }}
          branch: ${{ github.ref }}