From ff652c64555b937fa3c9a0bfa7893ad0f729ce1b Mon Sep 17 00:00:00 2001
From: guillaume-gricourt <guipagui@gmail.com>
Date: Mon, 9 Feb 2026 04:02:22 +0000
Subject: [PATCH 1/2] Updating retropath2 from version 3.8.1 to 3.9.0

---
 tools/retropath2/retropath2_wrapper.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tools/retropath2/retropath2_wrapper.xml b/tools/retropath2/retropath2_wrapper.xml
index e4d0b95..f388521 100644
--- a/tools/retropath2/retropath2_wrapper.xml
+++ b/tools/retropath2/retropath2_wrapper.xml
@@ -3,7 +3,7 @@
     <description>Build a reaction network from a set of source compounds to a set of sink compounds</description>
     <macros>
         <token name="@VERSION_SUFFIX@">0</token>
-        <token name="@TOOL_VERSION@">3.8.1</token>
+        <token name="@TOOL_VERSION@">3.9.0</token>
     </macros>
     <requirements>
         <requirement type="package" version="@TOOL_VERSION@">retropath2_wrapper</requirement>

From ce5b58442b47db6db2e50de4236d2772aec968b2 Mon Sep 17 00:00:00 2001
From: GuillaumeG <guipagui@gmail.com>
Date: Thu, 12 Feb 2026 13:25:47 +0100
Subject: [PATCH 2/2] Update selected option in retropath2_wrapper.xml

---
 tools/retropath2/retropath2_wrapper.xml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/tools/retropath2/retropath2_wrapper.xml b/tools/retropath2/retropath2_wrapper.xml
index f388521..0bcc418 100644
--- a/tools/retropath2/retropath2_wrapper.xml
+++ b/tools/retropath2/retropath2_wrapper.xml
@@ -86,7 +86,7 @@
                 <option value="r20220104">r20220104</option>
                 <option value="r20220224">r20220224</option>
                 <option value="r20250728">r20250728</option>
-                <option value="r20260202" selected="true">r20260202</option>
+                <option value="r20260206" selected="true">r20260206</option>
             </param>
             <param name="topx" type="integer" value="100" min="1" max="1000000" label="TopX"
                 help="The maximal number of intermediate compounds to use as new starting points for a next iteration of the retrosynthesis algorithm." />
@@ -163,4 +163,4 @@ Output
     <citations>
         <citation type="doi">10.1016/j.ymben.2017.12.002 </citation>
     </citations>
-</tool>
\ No newline at end of file
+</tool>