From d680913585b6a2165e6f614c722462e333048a97 Mon Sep 17 00:00:00 2001 From: ChocolateCharlie Date: Wed, 29 Jun 2022 21:37:23 +0200 Subject: [PATCH] Remove species_compartments intermediary variable --- jupyter_notebooks/createModel.ipynb | 15 +-------------- 1 file changed, 1 insertion(+), 14 deletions(-) diff --git a/jupyter_notebooks/createModel.ipynb b/jupyter_notebooks/createModel.ipynb index 6ef050f7..572b5b59 100644 --- a/jupyter_notebooks/createModel.ipynb +++ b/jupyter_notebooks/createModel.ipynb @@ -202,19 +202,6 @@ "species_sheet = np.array([np.array(line.strip().split(\"\\t\")) for line in open('Species.txt', encoding='latin-1')])" ] }, - { - "cell_type": "code", - "execution_count": null, - "metadata": {}, - "outputs": [], - "source": [ - "#read in each line minus the header row of species file\n", - "species_compartments = [] # Create a list of \"home\" compartments for each species in the model\n", - "for row in species_sheet[1:]:\n", - " species_compartments.append(row[1]) \n", - "species_compartments = np.array(species_compartments)" - ] - }, { "cell_type": "markdown", "metadata": {}, @@ -232,7 +219,7 @@ "fileModel.write(\"\\n\")\n", "for idx,val in enumerate(species_sheet[1:]):\n", " fileModel.write(\" Species \")\n", - " fileModel.write(\"%s in %s\" % (val[0], species_compartments[idx]))\n", + " fileModel.write(\"%s in %s\" % (val[0], val[1]))\n", " fileModel.write(\";\\n\")" ] },