Error in install

[MahdiDoost]

In the name of God
I tried to install py_stringsimjoin:
sudo pip3 install py-stringsimjoin
bet I get below error:
ERROR: Command errored out with exit status 1:
command: /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-u5rj1yb7/py-stringmatching/setup.py'"'"'; file='"'"'/tmp/pip-install-u5rj1yb7/py-stringmatching/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /tmp/pip-record-5c4445oo/install-record.txt --single-version-externally-managed --compile
cwd: /tmp/pip-install-u5rj1yb7/py-stringmatching/
Complete output (82 lines):
running install
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.5
creating build/lib.linux-x86_64-3.5/py_stringmatching
copying py_stringmatching/utils.py -> build/lib.linux-x86_64-3.5/py_stringmatching
copying py_stringmatching/init.py -> build/lib.linux-x86_64-3.5/py_stringmatching
creating build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/overlap_coefficient.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/token_sort.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/soundex.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/phonetic_similarity_measure.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/jaro.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/tversky_index.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/needleman_wunsch.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/dice.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/levenshtein.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/hybrid_similarity_measure.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/partial_ratio.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/init.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/sequence_similarity_measure.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/similarity_measure.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/token_similarity_measure.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/editex.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/cosine.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/smith_waterman.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/generalized_jaccard.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/soft_tfidf.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/ratio.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/jaccard.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/monge_elkan.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/hamming_distance.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/affine.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/bag_distance.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/partial_token_sort.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/tfidf.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/jaro_winkler.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
creating build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
copying py_stringmatching/tokenizer/qgram_tokenizer.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
copying py_stringmatching/tokenizer/definition_tokenizer.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
copying py_stringmatching/tokenizer/init.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
copying py_stringmatching/tokenizer/tokenizer.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
copying py_stringmatching/tokenizer/alphabetic_tokenizer.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
copying py_stringmatching/tokenizer/alphanumeric_tokenizer.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
copying py_stringmatching/tokenizer/delimiter_tokenizer.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
copying py_stringmatching/tokenizer/whitespace_tokenizer.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
creating build/lib.linux-x86_64-3.5/py_stringmatching/tests
copying py_stringmatching/tests/test_sim_Soundex.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tests
copying py_stringmatching/tests/init.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tests
copying py_stringmatching/tests/test_tokenizers.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tests
copying py_stringmatching/tests/test_simfunctions.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tests
creating build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
copying py_stringmatching/similarity_measure/cython/init.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
running egg_info
writing top-level names to py_stringmatching.egg-info/top_level.txt
writing py_stringmatching.egg-info/PKG-INFO
writing dependency_links to py_stringmatching.egg-info/dependency_links.txt
writing requirements to py_stringmatching.egg-info/requires.txt
reading manifest file 'py_stringmatching.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'requirements.txt'
writing manifest file 'py_stringmatching.egg-info/SOURCES.txt'
copying py_stringmatching/similarity_measure/cython/cython_affine.c -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
copying py_stringmatching/similarity_measure/cython/cython_jaro.c -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
copying py_stringmatching/similarity_measure/cython/cython_jaro_winkler.c -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
copying py_stringmatching/similarity_measure/cython/cython_levenshtein.c -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
copying py_stringmatching/similarity_measure/cython/cython_needleman_wunsch.c -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
copying py_stringmatching/similarity_measure/cython/cython_smith_waterman.c -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
copying py_stringmatching/similarity_measure/cython/cython_utils.c -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
running build_ext
building 'py_stringmatching.similarity_measure.cython.cython_levenshtein' extension
creating build/temp.linux-x86_64-3.5
creating build/temp.linux-x86_64-3.5/py_stringmatching
creating build/temp.linux-x86_64-3.5/py_stringmatching/similarity_measure
creating build/temp.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-nLrllb/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.5/dist-packages/numpy/core/include -I/usr/include/python3.5m -c py_stringmatching/similarity_measure/cython/cython_levenshtein.c -o build/temp.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython/cython_levenshtein.o
py_stringmatching/similarity_measure/cython/cython_levenshtein.c:4:20: fatal error: Python.h: No such file or directory
#include "Python.h"
^
compilation terminated.
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
----------------------------------------
ERROR: Command errored out with exit status 1: /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-u5rj1yb7/py-stringmatching/setup.py'"'"'; file='"'"'/tmp/pip-install-u5rj1yb7/py-stringmatching/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /tmp/pip-record-5c4445oo/install-record.txt --single-version-externally-managed --compile Check the logs for full command output.

[christiemj09]

Looking at the error here, it appears that the command that failed couldn't find the include directory associated with the Python installation you're installing this for. Some things to try in the shell first to make sure your Python installation is consistent:

$ # General Python installation info
$ which python
$ python --version
$ which python3
$ python3 --version
$ which pip
$ pip -V
$ which pip3
$ pip3 -V

Also, the distribution and version number of Linux you're using will likely be helpful for further troubleshooting.

Finally, judging from the paths in the error message and your use of sudo, it seems like you might be trying to install the package on your system globally. We test installations for py-stringsimjoin in a virtual environment which controls for environment issues like this; accordingly, installations of py-stringsimjoin will be most stable in a virtual environment. Some documentation on installing and using virtualenv can be found here.

[MahdiDoost]

In the name of God
Hello,
Thank you for replaying
General Python installation info is below:
aliasghar@aliasghar-Aspire-5750G:$ which python
/usr/bin/python
aliasghar@aliasghar-Aspire-5750G:$ python --version
Python 2.7.13
aliasghar@aliasghar-Aspire-5750G:$ which python3
/usr/bin/python3
aliasghar@aliasghar-Aspire-5750G:$ python3 --version
Python 3.5.3
aliasghar@aliasghar-Aspire-5750G:$ which pip
/usr/local/bin/pip
aliasghar@aliasghar-Aspire-5750G:$ pip -V
pip 19.2.3 from /usr/local/lib/python3.5/dist-packages/pip (python 3.5)
aliasghar@aliasghar-Aspire-5750G:$ which pip3
/usr/local/bin/pip3
aliasghar@aliasghar-Aspire-5750G:$ pip3 -V
pip 19.2.3 from /usr/local/lib/python3.5/dist-packages/pip (python 3.5)
aliasghar@aliasghar-Aspire-5750G:~$

[MahdiDoost]

Linux Version:
<NAME="Ubuntu"
VERSION="17.04 (Zesty Zapus)"
ID=ubuntu
ID_LIKE=debian
PRETTY_NAME="Ubuntu 17.04"
VERSION_ID="17.04"
HOME_URL="https://www.ubuntu.com/"
SUPPORT_URL="https://help.ubuntu.com/"
BUG_REPORT_URL="https://bugs.launchpad.net/ubuntu/"
PRIVACY_POLICY_URL="https://www.ubuntu.com/legal/terms-and-policies/privacy-policy"
VERSION_CODENAME=zesty
UBUNTU_CODENAME=zesty

[christiemj09]

Looks like pip and python are in agreement from what you've posted. If it really is just a matter of cython not being able to find Python.h, then you could try something like this:

$ find /usr -name Python.h  # Find where your Python installation's Python.h is
/usr/local/include/python3.5m/Python.h
$ # ^^ Or something like that; could very well be different for your environment
$ EXTRA_INCLUDEDIR=/usr/local/include/python3.5m
$ # ^^ Whatever you think is the correct location based on find
$ export CPPFLAGS=-I$EXTRA_INCLUDEDIR # Add this additional location to the CPP search path
$ sudo pip3 install py-stringsimjoin # Try installing again

Though, as I mentioned, if you have the ability to install virtualenv on your machine, I highly recommend trying to install the package in a virtual environment instead.

[MahdiDoost]

In the name of God
hello,
aliasghar@aliasghar-Aspire-5750G:$ find /usr -name Python.h
/usr/include/python2.7/Python.h
aliasghar@aliasghar-Aspire-5750G:$ /usr/local/include/python3.5m/Python.h
bash: /usr/local/include/python3.5m/Python.h: No such file or directory
aliasghar@aliasghar-Aspire-5750G:$ # ^^ Or something like that; could very well be different for your environment
aliasghar@aliasghar-Aspire-5750G:$ EXTRA_INCLUDEDIR=/usr/local/include/python3.5m
aliasghar@aliasghar-Aspire-5750G:$ export CPPFLAGS=-I$EXTRA_INCLUDEDIR
aliasghar@aliasghar-Aspire-5750G:$ sudo pip3 install py-stringsimjoin
[sudo] password for aliasghar:
WARNING: The directory '/home/aliasghar/.cache/pip/http' or its parent directory is not owned by the current user and the cache has been disabled. Please check the permissions and owner of that directory. If executing pip with sudo, you may want sudo's -H flag.
WARNING: The directory '/home/aliasghar/.cache/pip' or its parent directory is not owned by the current user and caching wheels has been disabled. check the permissions and owner of that directory. If executing pip with sudo, you may want sudo's -H flag.
Collecting py-stringsimjoin
Downloading https://files.pythonhosted.org/packages/b2/8e/5115497ca6ce9587560f656ec03e42ae82c118d7470f5a1934fb63e77273/py_stringsimjoin-0.3.1.tar.gz (1.1MB)
|████████████████████████████████| 1.1MB 267kB/s
Requirement already satisfied: PyPrind>=2.9.3 in /usr/local/lib/python3.5/dist-packages (from py-stringsimjoin) (2.11.2)
Requirement already satisfied: joblib in /usr/local/lib/python3.5/dist-packages (from py-stringsimjoin) (0.13.2)
Requirement already satisfied: pandas>=0.16.0 in /usr/local/lib/python3.5/dist-packages (from py-stringsimjoin) (0.20.3)
Collecting py_stringmatching>=0.2.1 (from py-stringsimjoin)
Downloading https://files.pythonhosted.org/packages/3e/a3/89c3d02bbf1e24868673702ebd38a3b76259cb124a5d26d46a050d3fccf2/py_stringmatching-0.4.1.tar.gz (646kB)
|████████████████████████████████| 655kB 274kB/s
Requirement already satisfied: six in /usr/local/lib/python3.5/dist-packages (from py-stringsimjoin) (1.11.0)
Requirement already satisfied: python-dateutil>=2 in /usr/local/lib/python3.5/dist-packages (from pandas>=0.16.0->py-stringsimjoin) (2.6.1)
Requirement already satisfied: pytz>=2011k in /usr/local/lib/python3.5/dist-packages (from pandas>=0.16.0->py-stringsimjoin) (2017.2)
Requirement already satisfied: numpy>=1.7.0 in /usr/local/lib/python3.5/dist-packages (from pandas>=0.16.0->py-stringsimjoin) (1.13.1)
Installing collected packages: py-stringmatching, py-stringsimjoin
Running setup.py install for py-stringmatching ... error
ERROR: Command errored out with exit status 1:
command: /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-rh5pk7wg/py-stringmatching/setup.py'"'"'; file='"'"'/tmp/pip-install-rh5pk7wg/py-stringmatching/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /tmp/pip-record-cri0mt7u/install-record.txt --single-version-externally-managed --compile
cwd: /tmp/pip-install-rh5pk7wg/py-stringmatching/
Complete output (82 lines):
running install
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.5
creating build/lib.linux-x86_64-3.5/py_stringmatching
copying py_stringmatching/utils.py -> build/lib.linux-x86_64-3.5/py_stringmatching
copying py_stringmatching/init.py -> build/lib.linux-x86_64-3.5/py_stringmatching
creating build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/overlap_coefficient.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/token_sort.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/soundex.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/phonetic_similarity_measure.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/jaro.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/tversky_index.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/needleman_wunsch.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/dice.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/levenshtein.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/hybrid_similarity_measure.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/partial_ratio.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/init.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/sequence_similarity_measure.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/similarity_measure.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/token_similarity_measure.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/editex.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/cosine.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/smith_waterman.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/generalized_jaccard.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/soft_tfidf.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/ratio.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/jaccard.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/monge_elkan.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/hamming_distance.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/affine.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/bag_distance.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/partial_token_sort.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/tfidf.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
copying py_stringmatching/similarity_measure/jaro_winkler.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
creating build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
copying py_stringmatching/tokenizer/qgram_tokenizer.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
copying py_stringmatching/tokenizer/definition_tokenizer.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
copying py_stringmatching/tokenizer/init.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
copying py_stringmatching/tokenizer/tokenizer.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
copying py_stringmatching/tokenizer/alphabetic_tokenizer.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
copying py_stringmatching/tokenizer/alphanumeric_tokenizer.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
copying py_stringmatching/tokenizer/delimiter_tokenizer.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
copying py_stringmatching/tokenizer/whitespace_tokenizer.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
creating build/lib.linux-x86_64-3.5/py_stringmatching/tests
copying py_stringmatching/tests/test_sim_Soundex.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tests
copying py_stringmatching/tests/init.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tests
copying py_stringmatching/tests/test_tokenizers.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tests
copying py_stringmatching/tests/test_simfunctions.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tests
creating build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
copying py_stringmatching/similarity_measure/cython/init.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
running egg_info
writing dependency_links to py_stringmatching.egg-info/dependency_links.txt
writing py_stringmatching.egg-info/PKG-INFO
writing requirements to py_stringmatching.egg-info/requires.txt
writing top-level names to py_stringmatching.egg-info/top_level.txt
reading manifest file 'py_stringmatching.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'requirements.txt'
writing manifest file 'py_stringmatching.egg-info/SOURCES.txt'
copying py_stringmatching/similarity_measure/cython/cython_affine.c -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
copying py_stringmatching/similarity_measure/cython/cython_jaro.c -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
copying py_stringmatching/similarity_measure/cython/cython_jaro_winkler.c -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
copying py_stringmatching/similarity_measure/cython/cython_levenshtein.c -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
copying py_stringmatching/similarity_measure/cython/cython_needleman_wunsch.c -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
copying py_stringmatching/similarity_measure/cython/cython_smith_waterman.c -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
copying py_stringmatching/similarity_measure/cython/cython_utils.c -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
running build_ext
building 'py_stringmatching.similarity_measure.cython.cython_levenshtein' extension
creating build/temp.linux-x86_64-3.5
creating build/temp.linux-x86_64-3.5/py_stringmatching
creating build/temp.linux-x86_64-3.5/py_stringmatching/similarity_measure
creating build/temp.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-nLrllb/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.5/dist-packages/numpy/core/include -I/usr/include/python3.5m -c py_stringmatching/similarity_measure/cython/cython_levenshtein.c -o build/temp.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython/cython_levenshtein.o
py_stringmatching/similarity_measure/cython/cython_levenshtein.c:4:20: fatal error: Python.h: No such file or directory
#include "Python.h"
^
compilation terminated.
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
----------------------------------------
ERROR: Command errored out with exit status 1: /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-rh5pk7wg/py-stringmatching/setup.py'"'"'; file='"'"'/tmp/pip-install-rh5pk7wg/py-stringmatching/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /tmp/pip-record-cri0mt7u/install-record.txt --single-version-externally-managed --compile Check the logs for full command output.

[MahdiDoost]

aliasghar@aliasghar-Aspire-5750G:~$ EXTRA_INCLUDEDIR=/usr/include/python2.7/Python.h
aliasghar@aliasghar-Aspire-5750G:~$ export CPPFLAGS=-I$EXTRA_INCLUDEDIR
aliasghar@aliasghar-Aspire-5750G:~$ sudo pip3 install py-stringsimjoin
WARNING: The directory '/home/aliasghar/.cache/pip/http' or its parent directory is not owned by the current user and the cache has been disabled. Please check the permissions and owner of that directory. If executing pip with sudo, you may want sudo's -H flag.
WARNING: The directory '/home/aliasghar/.cache/pip' or its parent directory is not owned by the current user and caching wheels has been disabled. check the permissions and owner of that directory. If executing pip with sudo, you may want sudo's -H flag.
Collecting py-stringsimjoin
  Downloading https://files.pythonhosted.org/packages/b2/8e/5115497ca6ce9587560f656ec03e42ae82c118d7470f5a1934fb63e77273/py_stringsimjoin-0.3.1.tar.gz (1.1MB)
     |████████████████████████████████| 1.1MB 27kB/s 
Requirement already satisfied: PyPrind>=2.9.3 in /usr/local/lib/python3.5/dist-packages (from py-stringsimjoin) (2.11.2)
Requirement already satisfied: joblib in /usr/local/lib/python3.5/dist-packages (from py-stringsimjoin) (0.13.2)
Requirement already satisfied: pandas>=0.16.0 in /usr/local/lib/python3.5/dist-packages (from py-stringsimjoin) (0.20.3)
Collecting py_stringmatching>=0.2.1 (from py-stringsimjoin)
  Downloading https://files.pythonhosted.org/packages/3e/a3/89c3d02bbf1e24868673702ebd38a3b76259cb124a5d26d46a050d3fccf2/py_stringmatching-0.4.1.tar.gz (646kB)
     |████████████████████████████████| 655kB 199kB/s 
Requirement already satisfied: six in /usr/local/lib/python3.5/dist-packages (from py-stringsimjoin) (1.11.0)
Requirement already satisfied: python-dateutil>=2 in /usr/local/lib/python3.5/dist-packages (from pandas>=0.16.0->py-stringsimjoin) (2.6.1)
Requirement already satisfied: numpy>=1.7.0 in /usr/local/lib/python3.5/dist-packages (from pandas>=0.16.0->py-stringsimjoin) (1.13.1)
Requirement already satisfied: pytz>=2011k in /usr/local/lib/python3.5/dist-packages (from pandas>=0.16.0->py-stringsimjoin) (2017.2)
Installing collected packages: py-stringmatching, py-stringsimjoin
  Running setup.py install for py-stringmatching ... error
    ERROR: Command errored out with exit status 1:
     command: /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-rv7cp_o1/py-stringmatching/setup.py'"'"'; __file__='"'"'/tmp/pip-install-rv7cp_o1/py-stringmatching/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-j33174s5/install-record.txt --single-version-externally-managed --compile
         cwd: /tmp/pip-install-rv7cp_o1/py-stringmatching/
    Complete output (82 lines):
    running install
    running build
    running build_py
    creating build
    creating build/lib.linux-x86_64-3.5
    creating build/lib.linux-x86_64-3.5/py_stringmatching
    copying py_stringmatching/utils.py -> build/lib.linux-x86_64-3.5/py_stringmatching
    copying py_stringmatching/__init__.py -> build/lib.linux-x86_64-3.5/py_stringmatching
    creating build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/overlap_coefficient.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/token_sort.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/soundex.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/phonetic_similarity_measure.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/jaro.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/tversky_index.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/needleman_wunsch.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/dice.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/levenshtein.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/hybrid_similarity_measure.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/partial_ratio.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/__init__.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/sequence_similarity_measure.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/similarity_measure.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/token_similarity_measure.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/editex.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/cosine.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/smith_waterman.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/generalized_jaccard.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/soft_tfidf.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/ratio.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/jaccard.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/monge_elkan.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/hamming_distance.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/affine.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/bag_distance.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/partial_token_sort.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/tfidf.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/jaro_winkler.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    creating build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
    copying py_stringmatching/tokenizer/qgram_tokenizer.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
    copying py_stringmatching/tokenizer/definition_tokenizer.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
    copying py_stringmatching/tokenizer/__init__.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
    copying py_stringmatching/tokenizer/tokenizer.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
    copying py_stringmatching/tokenizer/alphabetic_tokenizer.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
    copying py_stringmatching/tokenizer/alphanumeric_tokenizer.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
    copying py_stringmatching/tokenizer/delimiter_tokenizer.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
    copying py_stringmatching/tokenizer/whitespace_tokenizer.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
    creating build/lib.linux-x86_64-3.5/py_stringmatching/tests
    copying py_stringmatching/tests/test_sim_Soundex.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tests
    copying py_stringmatching/tests/__init__.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tests
    copying py_stringmatching/tests/test_tokenizers.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tests
    copying py_stringmatching/tests/test_simfunctions.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tests
    creating build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
    copying py_stringmatching/similarity_measure/cython/__init__.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
    running egg_info
    writing requirements to py_stringmatching.egg-info/requires.txt
    writing top-level names to py_stringmatching.egg-info/top_level.txt
    writing py_stringmatching.egg-info/PKG-INFO
    writing dependency_links to py_stringmatching.egg-info/dependency_links.txt
    reading manifest file 'py_stringmatching.egg-info/SOURCES.txt'
    reading manifest template 'MANIFEST.in'
    warning: no files found matching 'requirements.txt'
    writing manifest file 'py_stringmatching.egg-info/SOURCES.txt'
    copying py_stringmatching/similarity_measure/cython/cython_affine.c -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
    copying py_stringmatching/similarity_measure/cython/cython_jaro.c -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
    copying py_stringmatching/similarity_measure/cython/cython_jaro_winkler.c -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
    copying py_stringmatching/similarity_measure/cython/cython_levenshtein.c -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
    copying py_stringmatching/similarity_measure/cython/cython_needleman_wunsch.c -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
    copying py_stringmatching/similarity_measure/cython/cython_smith_waterman.c -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
    copying py_stringmatching/similarity_measure/cython/cython_utils.c -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
    running build_ext
    building 'py_stringmatching.similarity_measure.cython.cython_levenshtein' extension
    creating build/temp.linux-x86_64-3.5
    creating build/temp.linux-x86_64-3.5/py_stringmatching
    creating build/temp.linux-x86_64-3.5/py_stringmatching/similarity_measure
    creating build/temp.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
    x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-nLrllb/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.5/dist-packages/numpy/core/include -I/usr/include/python3.5m -c py_stringmatching/similarity_measure/cython/cython_levenshtein.c -o build/temp.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython/cython_levenshtein.o
    py_stringmatching/similarity_measure/cython/cython_levenshtein.c:4:20: fatal error: Python.h: No such file or directory
     #include "Python.h"
                        ^
    compilation terminated.
    error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
    ----------------------------------------
ERROR: Command errored out with exit status 1: /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-rv7cp_o1/py-stringmatching/setup.py'"'"'; __file__='"'"'/tmp/pip-install-rv7cp_o1/py-stringmatching/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-j33174s5/install-record.txt --single-version-externally-managed --compile Check the logs for full command output.

[christiemj09]

A couple things to try here:

1. Find the right location to add to the CPP search path

From your second-to-last post, it looks like you were able to find the header file Python.h corresponding to your Python 2.7 installation, but it's not clear to me that you were able to find it for your Python 3.5 installation. If the file /usr/local/include/python3.5m/Python.h actually exists, then the following is very similar to what I suggested in my last post:

$ EXTRA_INCLUDEDIR=/usr/local/include/python3.5m # The *directory* that contains Python.h
$ export CPPFLAGS=-I$EXTRA_INCLUDEDIR
$ sudo -H pip3 install py-stringsimjoin # -H flag should get rid of warnings about pip's cache

However, if you cannot find a Python.h file associated with your Python 3.5 installation, then that installation is broken and you should either (a) re-install it or (b) uninstall it and install a different version of Python 3. In particular, the apt package python3-dev is a particularly stable version of Python 3 suitable for development:

$ sudo apt-get install python3-dev

2. Use a virtual environment

$ sudo -H pip3 install virtualenv
$ virtualenv myenv --python=python3 # Or the path to your desired python binary
$ source myenv/bin/activate
$ which python # Inside myenv
$ which pip # Inside myenv
$ pip install py-stringsimjoin

[MahdiDoost]

In the name of GOD
Hello,
Thank you for the response.

aliasghar@aliasghar-Aspire-5750G:~$ sudo -H pip3 install virtualenv
Requirement already satisfied: virtualenv in /usr/local/lib/python3.5/dist-packages (15.1.0)
aliasghar@aliasghar-Aspire-5750G:~$ virtualenv myenv --python=python3
Already using interpreter /usr/bin/python3
Using base prefix '/usr'
New python executable in /home/aliasghar/myenv/bin/python3
Also creating executable in /home/aliasghar/myenv/bin/python
Installing setuptools, pip, wheel...done.
aliasghar@aliasghar-Aspire-5750G:~$ source myenv/bin/activate
(myenv) aliasghar@aliasghar-Aspire-5750G:~$ which python
/home/aliasghar/myenv/bin/python
(myenv) aliasghar@aliasghar-Aspire-5750G:~$ which pip
/home/aliasghar/myenv/bin/pip
(myenv) aliasghar@aliasghar-Aspire-5750G:~$ pip install py-stringsimjoin
Collecting py-stringsimjoin
  Using cached https://files.pythonhosted.org/packages/b2/8e/5115497ca6ce9587560f656ec03e42ae82c118d7470f5a1934fb63e77273/py_stringsimjoin-0.3.1.tar.gz
Collecting joblib (from py-stringsimjoin)
  Using cached https://files.pythonhosted.org/packages/cd/c1/50a758e8247561e58cb87305b1e90b171b8c767b15b12a1734001f41d356/joblib-0.13.2-py2.py3-none-any.whl
Collecting pandas>=0.16.0 (from py-stringsimjoin)
  Downloading https://files.pythonhosted.org/packages/d9/05/38875a81040e679c196a854865dbafe4dfe5f92e8365ddfff21f2817d89d/pandas-0.25.1-cp35-cp35m-manylinux1_x86_64.whl (10.3MB)
     |████████████████████████████████| 10.3MB 130kB/s 
Collecting PyPrind>=2.9.3 (from py-stringsimjoin)
  Using cached https://files.pythonhosted.org/packages/1e/30/e76fb0c45da8aef49ea8d2a90d4e7a6877b45894c25f12fb961f009a891e/PyPrind-2.11.2-py3-none-any.whl
Collecting py_stringmatching>=0.2.1 (from py-stringsimjoin)
  Using cached https://files.pythonhosted.org/packages/3e/a3/89c3d02bbf1e24868673702ebd38a3b76259cb124a5d26d46a050d3fccf2/py_stringmatching-0.4.1.tar.gz
Collecting six (from py-stringsimjoin)
  Downloading https://files.pythonhosted.org/packages/73/fb/00a976f728d0d1fecfe898238ce23f502a721c0ac0ecfedb80e0d88c64e9/six-1.12.0-py2.py3-none-any.whl
Collecting python-dateutil>=2.6.1 (from pandas>=0.16.0->py-stringsimjoin)
  Downloading https://files.pythonhosted.org/packages/41/17/c62faccbfbd163c7f57f3844689e3a78bae1f403648a6afb1d0866d87fbb/python_dateutil-2.8.0-py2.py3-none-any.whl (226kB)
     |████████████████████████████████| 235kB 87kB/s 
Collecting pytz>=2017.2 (from pandas>=0.16.0->py-stringsimjoin)
  Downloading https://files.pythonhosted.org/packages/87/76/46d697698a143e05f77bec5a526bf4e56a0be61d63425b68f4ba553b51f2/pytz-2019.2-py2.py3-none-any.whl (508kB)
     |████████████████████████████████| 512kB 162kB/s 
Collecting numpy>=1.13.3 (from pandas>=0.16.0->py-stringsimjoin)
  Downloading https://files.pythonhosted.org/packages/9b/21/2b18339d24a2f73dcefb2f10f48aff6182e16da83e3a612684443c6cfb29/numpy-1.17.2-cp35-cp35m-manylinux1_x86_64.whl (20.1MB)
     |████████████████████████████████| 20.2MB 242kB/s 
Building wheels for collected packages: py-stringsimjoin, py-stringmatching
  Building wheel for py-stringsimjoin (setup.py) ... error
  ERROR: Command errored out with exit status 1:
   command: /home/aliasghar/myenv/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-ukz3bib1/py-stringsimjoin/setup.py'"'"'; __file__='"'"'/tmp/pip-install-ukz3bib1/py-stringsimjoin/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-gdtia1_2 --python-tag cp35
       cwd: /tmp/pip-install-ukz3bib1/py-stringsimjoin/
  Complete output (135 lines):
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib.linux-x86_64-3.5
  creating build/lib.linux-x86_64-3.5/py_stringsimjoin
  copying py_stringsimjoin/__init__.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin
  creating build/lib.linux-x86_64-3.5/py_stringsimjoin/similarity_measure
  copying py_stringsimjoin/similarity_measure/__init__.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/similarity_measure
  creating build/lib.linux-x86_64-3.5/py_stringsimjoin/join
  copying py_stringsimjoin/join/dice_join.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/join
  copying py_stringsimjoin/join/edit_distance_join_py.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/join
  copying py_stringsimjoin/join/edit_distance_join.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/join
  copying py_stringsimjoin/join/__init__.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/join
  copying py_stringsimjoin/join/set_sim_join.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/join
  copying py_stringsimjoin/join/overlap_join.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/join
  copying py_stringsimjoin/join/jaccard_join.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/join
  copying py_stringsimjoin/join/overlap_coefficient_join.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/join
  copying py_stringsimjoin/join/disk_edit_distance_join.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/join
  copying py_stringsimjoin/join/overlap_coefficient_join_py.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/join
  copying py_stringsimjoin/join/overlap_join_py.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/join
  copying py_stringsimjoin/join/jaccard_join_py.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/join
  copying py_stringsimjoin/join/cosine_join.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/join
  copying py_stringsimjoin/join/dice_join_py.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/join
  copying py_stringsimjoin/join/cosine_join_py.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/join
  creating build/lib.linux-x86_64-3.5/py_stringsimjoin/filter
  copying py_stringsimjoin/filter/position_filter.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/filter
  copying py_stringsimjoin/filter/filter.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/filter
  copying py_stringsimjoin/filter/suffix_filter.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/filter
  copying py_stringsimjoin/filter/size_filter.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/filter
  copying py_stringsimjoin/filter/prefix_filter.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/filter
  copying py_stringsimjoin/filter/__init__.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/filter
  copying py_stringsimjoin/filter/overlap_filter.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/filter
  copying py_stringsimjoin/filter/filter_utils.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/filter
  creating build/lib.linux-x86_64-3.5/py_stringsimjoin/utils
  copying py_stringsimjoin/utils/generic_helper.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/utils
  copying py_stringsimjoin/utils/token_ordering.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/utils
  copying py_stringsimjoin/utils/validation.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/utils
  copying py_stringsimjoin/utils/__init__.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/utils
  copying py_stringsimjoin/utils/simfunctions.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/utils
  copying py_stringsimjoin/utils/missing_value_handler.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/utils
  copying py_stringsimjoin/utils/converter.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/utils
  copying py_stringsimjoin/utils/missing_value_handler_disk.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/utils
  copying py_stringsimjoin/utils/pickle.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/utils
  creating build/lib.linux-x86_64-3.5/py_stringsimjoin/index
  copying py_stringsimjoin/index/prefix_index.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/index
  copying py_stringsimjoin/index/position_index.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/index
  copying py_stringsimjoin/index/inverted_index.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/index
  copying py_stringsimjoin/index/__init__.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/index
  copying py_stringsimjoin/index/size_index.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/index
  copying py_stringsimjoin/index/index.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/index
  creating build/lib.linux-x86_64-3.5/py_stringsimjoin/tests
  copying py_stringsimjoin/tests/test_suffix_filter.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/tests
  copying py_stringsimjoin/tests/test_converter_utils.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/tests
  copying py_stringsimjoin/tests/_test_disk_edit_dist_join.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/tests
  copying py_stringsimjoin/tests/test_apply_matcher.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/tests
  copying py_stringsimjoin/tests/__init__.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/tests
  copying py_stringsimjoin/tests/test_edit_dist_join.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/tests
  copying py_stringsimjoin/tests/test_prefix_filter.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/tests
  copying py_stringsimjoin/tests/test_overlap_filter.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/tests
  copying py_stringsimjoin/tests/test_size_filter.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/tests
  copying py_stringsimjoin/tests/test_profiler.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/tests
  copying py_stringsimjoin/tests/test_overlap_join.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/tests
  copying py_stringsimjoin/tests/test_helper_functions.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/tests
  copying py_stringsimjoin/tests/test_position_filter.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/tests
  copying py_stringsimjoin/tests/test_join.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/tests
  creating build/lib.linux-x86_64-3.5/py_stringsimjoin/profiler
  copying py_stringsimjoin/profiler/__init__.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/profiler
  copying py_stringsimjoin/profiler/profiler.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/profiler
  creating build/lib.linux-x86_64-3.5/py_stringsimjoin/datasets
  copying py_stringsimjoin/datasets/__init__.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/datasets
  copying py_stringsimjoin/datasets/base.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/datasets
  creating build/lib.linux-x86_64-3.5/py_stringsimjoin/matcher
  copying py_stringsimjoin/matcher/apply_matcher.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/matcher
  copying py_stringsimjoin/matcher/__init__.py -> build/lib.linux-x86_64-3.5/py_stringsimjoin/matcher
  running egg_info
  writing top-level names to py_stringsimjoin.egg-info/top_level.txt
  writing requirements to py_stringsimjoin.egg-info/requires.txt
  writing dependency_links to py_stringsimjoin.egg-info/dependency_links.txt
  writing py_stringsimjoin.egg-info/PKG-INFO
  reading manifest file 'py_stringsimjoin.egg-info/SOURCES.txt'
  reading manifest template 'MANIFEST.in'
  warning: no files found matching 'CHANGES.txt'
  warning: no files found matching '*.csv.gz' under directory 'py_stringsimjoin/tests'
  writing manifest file 'py_stringsimjoin.egg-info/SOURCES.txt'
  copying py_stringsimjoin/similarity_measure/cosine.cpp -> build/lib.linux-x86_64-3.5/py_stringsimjoin/similarity_measure
  copying py_stringsimjoin/similarity_measure/cosine.pyx -> build/lib.linux-x86_64-3.5/py_stringsimjoin/similarity_measure
  copying py_stringsimjoin/similarity_measure/dice.cpp -> build/lib.linux-x86_64-3.5/py_stringsimjoin/similarity_measure
  copying py_stringsimjoin/similarity_measure/dice.pyx -> build/lib.linux-x86_64-3.5/py_stringsimjoin/similarity_measure
  copying py_stringsimjoin/similarity_measure/edit_distance.cpp -> build/lib.linux-x86_64-3.5/py_stringsimjoin/similarity_measure
  copying py_stringsimjoin/similarity_measure/edit_distance.pyx -> build/lib.linux-x86_64-3.5/py_stringsimjoin/similarity_measure
  copying py_stringsimjoin/similarity_measure/jaccard.cpp -> build/lib.linux-x86_64-3.5/py_stringsimjoin/similarity_measure
  copying py_stringsimjoin/similarity_measure/jaccard.pyx -> build/lib.linux-x86_64-3.5/py_stringsimjoin/similarity_measure
  copying py_stringsimjoin/join/cosine_join_cy.cpp -> build/lib.linux-x86_64-3.5/py_stringsimjoin/join
  copying py_stringsimjoin/join/cosine_join_cy.pyx -> build/lib.linux-x86_64-3.5/py_stringsimjoin/join
  copying py_stringsimjoin/join/dice_join_cy.cpp -> build/lib.linux-x86_64-3.5/py_stringsimjoin/join
  copying py_stringsimjoin/join/dice_join_cy.pyx -> build/lib.linux-x86_64-3.5/py_stringsimjoin/join
  copying py_stringsimjoin/join/disk_edit_distance_join_cy.cpp -> build/lib.linux-x86_64-3.5/py_stringsimjoin/join
  copying py_stringsimjoin/join/disk_edit_distance_join_cy.pyx -> build/lib.linux-x86_64-3.5/py_stringsimjoin/join
  copying py_stringsimjoin/join/edit_distance_join_cy.cpp -> build/lib.linux-x86_64-3.5/py_stringsimjoin/join
  copying py_stringsimjoin/join/edit_distance_join_cy.pyx -> build/lib.linux-x86_64-3.5/py_stringsimjoin/join
  copying py_stringsimjoin/join/jaccard_join_cy.cpp -> build/lib.linux-x86_64-3.5/py_stringsimjoin/join
  copying py_stringsimjoin/join/jaccard_join_cy.pyx -> build/lib.linux-x86_64-3.5/py_stringsimjoin/join
  copying py_stringsimjoin/join/overlap_coefficient_join_cy.cpp -> build/lib.linux-x86_64-3.5/py_stringsimjoin/join
  copying py_stringsimjoin/join/overlap_coefficient_join_cy.pyx -> build/lib.linux-x86_64-3.5/py_stringsimjoin/join
  copying py_stringsimjoin/join/overlap_join_cy.cpp -> build/lib.linux-x86_64-3.5/py_stringsimjoin/join
  copying py_stringsimjoin/join/overlap_join_cy.pyx -> build/lib.linux-x86_64-3.5/py_stringsimjoin/join
  copying py_stringsimjoin/join/set_sim_join_cy.cpp -> build/lib.linux-x86_64-3.5/py_stringsimjoin/join
  copying py_stringsimjoin/join/set_sim_join_cy.pyx -> build/lib.linux-x86_64-3.5/py_stringsimjoin/join
  copying py_stringsimjoin/utils/cython_utils.cpp -> build/lib.linux-x86_64-3.5/py_stringsimjoin/utils
  copying py_stringsimjoin/utils/cython_utils.pyx -> build/lib.linux-x86_64-3.5/py_stringsimjoin/utils
  copying py_stringsimjoin/index/inverted_index_cy.cpp -> build/lib.linux-x86_64-3.5/py_stringsimjoin/index
  copying py_stringsimjoin/index/inverted_index_cy.pyx -> build/lib.linux-x86_64-3.5/py_stringsimjoin/index
  copying py_stringsimjoin/index/position_index_cy.cpp -> build/lib.linux-x86_64-3.5/py_stringsimjoin/index
  copying py_stringsimjoin/index/position_index_cy.pyx -> build/lib.linux-x86_64-3.5/py_stringsimjoin/index
  creating build/lib.linux-x86_64-3.5/py_stringsimjoin/tests/data
  copying py_stringsimjoin/tests/data/table_A.csv -> build/lib.linux-x86_64-3.5/py_stringsimjoin/tests/data
  copying py_stringsimjoin/tests/data/table_B.csv -> build/lib.linux-x86_64-3.5/py_stringsimjoin/tests/data
  creating build/lib.linux-x86_64-3.5/py_stringsimjoin/datasets/data
  copying py_stringsimjoin/datasets/data/books_table_A.csv.gz -> build/lib.linux-x86_64-3.5/py_stringsimjoin/datasets/data
  copying py_stringsimjoin/datasets/data/books_table_B.csv.gz -> build/lib.linux-x86_64-3.5/py_stringsimjoin/datasets/data
  copying py_stringsimjoin/datasets/data/person_table_A.csv -> build/lib.linux-x86_64-3.5/py_stringsimjoin/datasets/data
  copying py_stringsimjoin/datasets/data/person_table_B.csv -> build/lib.linux-x86_64-3.5/py_stringsimjoin/datasets/data
  running build_ext
  building 'py_stringsimjoin.utils.cython_utils' extension
  creating build/temp.linux-x86_64-3.5
  creating build/temp.linux-x86_64-3.5/py_stringsimjoin
  creating build/temp.linux-x86_64-3.5/py_stringsimjoin/utils
  x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-nLrllb/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/local/include/python3.5m -fPIC -I/usr/include/python3.5m -I/home/aliasghar/myenv/include/python3.5m -c py_stringsimjoin/utils/cython_utils.cpp -o build/temp.linux-x86_64-3.5/py_stringsimjoin/utils/cython_utils.o -I./py_stringsimjoin/index/ -O3 -ffast-math -march=native
  cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
  py_stringsimjoin/utils/cython_utils.cpp:4:20: fatal error: Python.h: No such file or directory
   #include "Python.h"
                      ^
  compilation terminated.
  error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
  ----------------------------------------
  ERROR: Failed building wheel for py-stringsimjoin
  Running setup.py clean for py-stringsimjoin
  Building wheel for py-stringmatching (setup.py) ... error
  ERROR: Command errored out with exit status 1:
   command: /home/aliasghar/myenv/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-ukz3bib1/py-stringmatching/setup.py'"'"'; __file__='"'"'/tmp/pip-install-ukz3bib1/py-stringmatching/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-hgli4s6l --python-tag cp35
       cwd: /tmp/pip-install-ukz3bib1/py-stringmatching/
  Complete output (82 lines):
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib.linux-x86_64-3.5
  creating build/lib.linux-x86_64-3.5/py_stringmatching
  copying py_stringmatching/utils.py -> build/lib.linux-x86_64-3.5/py_stringmatching
  copying py_stringmatching/__init__.py -> build/lib.linux-x86_64-3.5/py_stringmatching
  creating build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
  copying py_stringmatching/similarity_measure/overlap_coefficient.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
  copying py_stringmatching/similarity_measure/token_sort.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
  copying py_stringmatching/similarity_measure/soundex.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
  copying py_stringmatching/similarity_measure/phonetic_similarity_measure.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
  copying py_stringmatching/similarity_measure/jaro.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
  copying py_stringmatching/similarity_measure/tversky_index.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
  copying py_stringmatching/similarity_measure/needleman_wunsch.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
  copying py_stringmatching/similarity_measure/dice.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
  copying py_stringmatching/similarity_measure/levenshtein.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
  copying py_stringmatching/similarity_measure/hybrid_similarity_measure.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
  copying py_stringmatching/similarity_measure/partial_ratio.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
  copying py_stringmatching/similarity_measure/__init__.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
  copying py_stringmatching/similarity_measure/sequence_similarity_measure.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
  copying py_stringmatching/similarity_measure/similarity_measure.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
  copying py_stringmatching/similarity_measure/token_similarity_measure.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
  copying py_stringmatching/similarity_measure/editex.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
  copying py_stringmatching/similarity_measure/cosine.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
  copying py_stringmatching/similarity_measure/smith_waterman.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
  copying py_stringmatching/similarity_measure/generalized_jaccard.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
  copying py_stringmatching/similarity_measure/soft_tfidf.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
  copying py_stringmatching/similarity_measure/ratio.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
  copying py_stringmatching/similarity_measure/jaccard.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
  copying py_stringmatching/similarity_measure/monge_elkan.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
  copying py_stringmatching/similarity_measure/hamming_distance.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
  copying py_stringmatching/similarity_measure/affine.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
  copying py_stringmatching/similarity_measure/bag_distance.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
  copying py_stringmatching/similarity_measure/partial_token_sort.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
  copying py_stringmatching/similarity_measure/tfidf.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
  copying py_stringmatching/similarity_measure/jaro_winkler.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
  creating build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
  copying py_stringmatching/tokenizer/qgram_tokenizer.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
  copying py_stringmatching/tokenizer/definition_tokenizer.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
  copying py_stringmatching/tokenizer/__init__.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
  copying py_stringmatching/tokenizer/tokenizer.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
  copying py_stringmatching/tokenizer/alphabetic_tokenizer.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
  copying py_stringmatching/tokenizer/alphanumeric_tokenizer.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
  copying py_stringmatching/tokenizer/delimiter_tokenizer.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
  copying py_stringmatching/tokenizer/whitespace_tokenizer.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
  creating build/lib.linux-x86_64-3.5/py_stringmatching/tests
  copying py_stringmatching/tests/test_sim_Soundex.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tests
  copying py_stringmatching/tests/__init__.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tests
  copying py_stringmatching/tests/test_tokenizers.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tests
  copying py_stringmatching/tests/test_simfunctions.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tests
  creating build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
  copying py_stringmatching/similarity_measure/cython/__init__.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
  running egg_info
  writing py_stringmatching.egg-info/PKG-INFO
  writing dependency_links to py_stringmatching.egg-info/dependency_links.txt
  writing requirements to py_stringmatching.egg-info/requires.txt
  writing top-level names to py_stringmatching.egg-info/top_level.txt
  reading manifest file 'py_stringmatching.egg-info/SOURCES.txt'
  reading manifest template 'MANIFEST.in'
  warning: no files found matching 'requirements.txt'
  writing manifest file 'py_stringmatching.egg-info/SOURCES.txt'
  copying py_stringmatching/similarity_measure/cython/cython_affine.c -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
  copying py_stringmatching/similarity_measure/cython/cython_jaro.c -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
  copying py_stringmatching/similarity_measure/cython/cython_jaro_winkler.c -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
  copying py_stringmatching/similarity_measure/cython/cython_levenshtein.c -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
  copying py_stringmatching/similarity_measure/cython/cython_needleman_wunsch.c -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
  copying py_stringmatching/similarity_measure/cython/cython_smith_waterman.c -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
  copying py_stringmatching/similarity_measure/cython/cython_utils.c -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
  running build_ext
  building 'py_stringmatching.similarity_measure.cython.cython_levenshtein' extension
  creating build/temp.linux-x86_64-3.5
  creating build/temp.linux-x86_64-3.5/py_stringmatching
  creating build/temp.linux-x86_64-3.5/py_stringmatching/similarity_measure
  creating build/temp.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
  x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-nLrllb/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/local/include/python3.5m -fPIC -I/tmp/pip-install-ukz3bib1/py-stringmatching/.eggs/numpy-1.17.2-py3.5-linux-x86_64.egg/numpy/core/include -I/usr/include/python3.5m -I/home/aliasghar/myenv/include/python3.5m -c py_stringmatching/similarity_measure/cython/cython_levenshtein.c -o build/temp.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython/cython_levenshtein.o
  py_stringmatching/similarity_measure/cython/cython_levenshtein.c:4:20: fatal error: Python.h: No such file or directory
   #include "Python.h"
                      ^
  compilation terminated.
  error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
  ----------------------------------------
  ERROR: Failed building wheel for py-stringmatching
  Running setup.py clean for py-stringmatching
Failed to build py-stringsimjoin py-stringmatching
Installing collected packages: joblib, six, python-dateutil, pytz, numpy, pandas, PyPrind, py-stringmatching, py-stringsimjoin
  Running setup.py install for py-stringmatching ... error
    ERROR: Command errored out with exit status 1:
     command: /home/aliasghar/myenv/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-ukz3bib1/py-stringmatching/setup.py'"'"'; __file__='"'"'/tmp/pip-install-ukz3bib1/py-stringmatching/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-ik4hcuq1/install-record.txt --single-version-externally-managed --compile --install-headers /home/aliasghar/myenv/include/site/python3.5/py-stringmatching
         cwd: /tmp/pip-install-ukz3bib1/py-stringmatching/
    Complete output (82 lines):
    running install
    running build
    running build_py
    creating build
    creating build/lib.linux-x86_64-3.5
    creating build/lib.linux-x86_64-3.5/py_stringmatching
    copying py_stringmatching/utils.py -> build/lib.linux-x86_64-3.5/py_stringmatching
    copying py_stringmatching/__init__.py -> build/lib.linux-x86_64-3.5/py_stringmatching
    creating build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/overlap_coefficient.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/token_sort.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/soundex.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/phonetic_similarity_measure.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/jaro.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/tversky_index.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/needleman_wunsch.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/dice.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/levenshtein.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/hybrid_similarity_measure.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/partial_ratio.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/__init__.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/sequence_similarity_measure.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/similarity_measure.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/token_similarity_measure.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/editex.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/cosine.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/smith_waterman.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/generalized_jaccard.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/soft_tfidf.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/ratio.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/jaccard.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/monge_elkan.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/hamming_distance.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/affine.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/bag_distance.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/partial_token_sort.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/tfidf.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    copying py_stringmatching/similarity_measure/jaro_winkler.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure
    creating build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
    copying py_stringmatching/tokenizer/qgram_tokenizer.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
    copying py_stringmatching/tokenizer/definition_tokenizer.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
    copying py_stringmatching/tokenizer/__init__.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
    copying py_stringmatching/tokenizer/tokenizer.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
    copying py_stringmatching/tokenizer/alphabetic_tokenizer.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
    copying py_stringmatching/tokenizer/alphanumeric_tokenizer.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
    copying py_stringmatching/tokenizer/delimiter_tokenizer.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
    copying py_stringmatching/tokenizer/whitespace_tokenizer.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tokenizer
    creating build/lib.linux-x86_64-3.5/py_stringmatching/tests
    copying py_stringmatching/tests/test_sim_Soundex.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tests
    copying py_stringmatching/tests/__init__.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tests
    copying py_stringmatching/tests/test_tokenizers.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tests
    copying py_stringmatching/tests/test_simfunctions.py -> build/lib.linux-x86_64-3.5/py_stringmatching/tests
    creating build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
    copying py_stringmatching/similarity_measure/cython/__init__.py -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
    running egg_info
    writing top-level names to py_stringmatching.egg-info/top_level.txt
    writing py_stringmatching.egg-info/PKG-INFO
    writing dependency_links to py_stringmatching.egg-info/dependency_links.txt
    writing requirements to py_stringmatching.egg-info/requires.txt
    reading manifest file 'py_stringmatching.egg-info/SOURCES.txt'
    reading manifest template 'MANIFEST.in'
    warning: no files found matching 'requirements.txt'
    writing manifest file 'py_stringmatching.egg-info/SOURCES.txt'
    copying py_stringmatching/similarity_measure/cython/cython_affine.c -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
    copying py_stringmatching/similarity_measure/cython/cython_jaro.c -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
    copying py_stringmatching/similarity_measure/cython/cython_jaro_winkler.c -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
    copying py_stringmatching/similarity_measure/cython/cython_levenshtein.c -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
    copying py_stringmatching/similarity_measure/cython/cython_needleman_wunsch.c -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
    copying py_stringmatching/similarity_measure/cython/cython_smith_waterman.c -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
    copying py_stringmatching/similarity_measure/cython/cython_utils.c -> build/lib.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
    running build_ext
    building 'py_stringmatching.similarity_measure.cython.cython_levenshtein' extension
    creating build/temp.linux-x86_64-3.5
    creating build/temp.linux-x86_64-3.5/py_stringmatching
    creating build/temp.linux-x86_64-3.5/py_stringmatching/similarity_measure
    creating build/temp.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython
    x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-nLrllb/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/local/include/python3.5m -fPIC -I/home/aliasghar/myenv/lib/python3.5/site-packages/numpy/core/include -I/usr/include/python3.5m -I/home/aliasghar/myenv/include/python3.5m -c py_stringmatching/similarity_measure/cython/cython_levenshtein.c -o build/temp.linux-x86_64-3.5/py_stringmatching/similarity_measure/cython/cython_levenshtein.o
    py_stringmatching/similarity_measure/cython/cython_levenshtein.c:4:20: fatal error: Python.h: No such file or directory
     #include "Python.h"
                        ^
    compilation terminated.
    error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
    ----------------------------------------
ERROR: Command errored out with exit status 1: /home/aliasghar/myenv/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-ukz3bib1/py-stringmatching/setup.py'"'"'; __file__='"'"'/tmp/pip-install-ukz3bib1/py-stringmatching/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-ik4hcuq1/install-record.txt --single-version-externally-managed --compile --install-headers /home/aliasghar/myenv/include/site/python3.5/py-stringmatching Check the logs for full command output.