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<!DOCTYPE html>
<html lang="en" data-theme="light">
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<title>Anshu Gupta</title>
<meta name="description" content="Anshu Gupta — PhD student in CSE at UC San Diego">
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footer { text-align: center; padding: 22px; font-size: 0.82rem; color: var(--text-muted); border-top: 1px solid var(--border); margin-top: 50px; }
</style>
</head>
<body>
<nav id="navbar" class="navbar fixed-top navbar-expand-md shadow-sm">
<div class="container" style="max-width:960px;">
<a class="navbar-brand" href="/"><span>Anshu</span> Gupta</a>
<div class="d-flex align-items-center ml-auto order-md-last">
<button id="theme-toggle" class="theme-btn mr-2" title="Toggle dark/light mode">
<i id="theme-icon" class="fas fa-moon"></i>
</button>
<button class="navbar-toggler" type="button" data-toggle="collapse" data-target="#navbarNav"
aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation">
<span class="navbar-toggler-icon"></span>
</button>
</div>
<div class="collapse navbar-collapse justify-content-end" id="navbarNav">
<ul class="navbar-nav">
<li class="nav-item"><a class="nav-link active" href="/">About</a></li>
<li class="nav-item"><a class="nav-link" href="/cv/">CV</a></li>
<li class="nav-item"><a class="nav-link" href="/publications/">Publications</a></li>
<li class="nav-item"><a class="nav-link" href="/projects/">Projects</a></li>
<li class="nav-item"><a class="nav-link" href="/teaching/">Teaching</a></li>
<li class="nav-item"><a class="nav-link" href="/news/">News</a></li>
<li class="nav-item"><a class="nav-link" href="/press/">Press</a></li>
</ul>
</div>
</div>
</nav>
<progress id="progress" value="0"></progress>
<div class="container mt-5 pt-4" style="max-width:860px;">
<!-- Profile -->
<div class="row align-items-center pt-3 mb-4">
<div class="col-md-3 text-center mb-3 mb-md-0">
<img class="profile-img" src="assets/img/prof_pic.jpg" alt="Anshu Gupta">
</div>
<div class="col-md-9">
<h1 class="profile-name">Anshu Gupta</h1>
<div class="profile-title">
PhD Student, Computer Science & Engineering<br>
<a href="https://ucsd.edu/" target="_blank" style="font-weight:500;">University of California San Diego</a>
</div>
<div class="profile-links">
<a href="mailto:ang037@ucsd.edu" title="Email"><i class="fas fa-envelope"></i></a>
<a href="https://scholar.google.com/citations?user=vRrKCdwAAAAJ&hl=en" target="_blank" title="Google Scholar"><i class="ai ai-google-scholar"></i></a>
<a href="https://github.com/ang037" target="_blank" title="GitHub"><i class="fab fa-github"></i></a>
<a href="https://www.linkedin.com/in/guptaanshu26" target="_blank" title="LinkedIn"><i class="fab fa-linkedin"></i></a>
</div>
</div>
</div>
<!-- Bio -->
<div class="bio-text">
<p>
I am a 4th-year PhD student in Computer Science and Engineering at the
<a href="https://ucsd.edu/" target="_blank"><strong>University of California San Diego</strong></a>,
advised by <a href="https://turakhia.ucsd.edu/" target="_blank"><strong>Prof. Yatish Turakhia</strong></a>
and <a href="http://eceweb.ucsd.edu/~smirarab/" target="_blank"><strong>Prof. Siavash Mirarab</strong></a>.
</p>
<p>
My research bridges <strong>computer architecture</strong>, <strong>machine learning systems</strong>,
and <strong>computational biology</strong>. I build hardware/software co-designed tools that make
large-scale genomic analyses fast and accessible — spanning FPGA-based accelerators for dynamic
programming and ML kernels to fully automated phylogenomic pipelines driven by deep learning-friendly
frameworks. My work is grounded in real hardware (I have a tape-out to my name from my industry years)
and aimed at scientific impact: my tools are actively used by researchers worldwide.
</p>
<p>
I collaborate with the <a href="https://vertebrategenomesproject.org/" target="_blank"><strong>Vertebrate Genomes Project (VGP)</strong></a>
consortium, researchers at the <a href="https://scripps.ucsd.edu/" target="_blank"><strong>Scripps Institution of Oceanography, UCSD</strong></a>,
and the <strong>AMD Omics Group</strong> on accelerating bioinformatics workloads at scale.
</p>
<p>
I received my M.S. in Computer Engineering from UC San Diego (GPA: 4.0) and my B.Tech. from
<a href="https://www.iiests.ac.in/" target="_blank"><strong>IIEST Shibpur, India</strong></a>
(GPA: 9.55/10, Rank: 4). Before my PhD, I spent 3+ years as a Digital Design Engineer at
<a href="https://www.analog.com/" target="_blank"><strong>Analog Devices</strong></a>.
I was also a <a href="https://www2.daad.de/deutschland/stipendium/datenbank/en/21148-scholarship-database/?detail=50015295" target="_blank"><strong>DAAD WISE Scholar</strong></a>
at the <a href="https://www.uni-bremen.de/en/" target="_blank">University of Bremen, Germany</a>.
</p>
</div>
<!-- ══ PRESS & MEDIA COVERAGE ══ -->
<div class="section-title" style="display:flex;align-items:center;justify-content:space-between;">
<span>Press & Media Coverage</span>
<a href="/press/" style="font-size:0.75rem;font-weight:500;letter-spacing:0;text-transform:none;">Full coverage →</a>
</div>
<div class="pnas-block">
<img class="pnas-cover-img" src="assets/img/pnas_cover.jpg" alt="PNAS Cover May 2025"
onerror="this.style.display='none';this.nextElementSibling.style.display='flex';">
<div class="pnas-placeholder" style="display:none;">PNAS<br>Cover<br>May 2025</div>
<div class="pnas-text">
<strong>PNAS Journal Cover</strong> — May 13, 2025, Vol. 122, No. 19<br>
<a href="https://doi.org/10.1073/pnas.2500553122" target="_blank">"Accurate, scalable, and fully automated inference of species trees from raw genome assemblies using ROADIES"</a>
selected as the cover article of <em>Proceedings of the National Academy of Sciences</em> and
featured across multiple scientific news platforms.
</div>
</div>
<div class="press-row">
<a class="press-chip" href="https://today.ucsd.edu/story/a-fully-automated-tool-for-species-tree-inference" target="_blank">
<i class="fas fa-newspaper"></i> UCSD Today
</a>
<a class="press-chip" href="https://www.pnas.org/toc/pnas/122/19" target="_blank">
<i class="fas fa-flask"></i> PNAS Cover
</a>
<a class="press-chip" href="https://www.linkedin.com/posts/university-of-california-san-diego---jacobs-school-of-engineering_a-team-of-engineers-at-uc-san-diego-is-making-activity-7327801133756755968-lHRj?utm_source=share&utm_medium=member_desktop&rcm=ACoAABq5YR8BD6zHsK4iqsdH-hSfbiHpdPmgwfk" target="_blank">
<i class="fab fa-linkedin"></i> Jacobs School of Engineering
</a>
<a class="press-chip" href="https://scienmag.com/new-breakthrough-fully-automated-tool-revolutionizes-species-tree-inference/" target="_blank">
<i class="fas fa-microscope"></i> SciEnMag
</a>
<a class="press-chip" href="https://www.eurekalert.org/news-releases/1082752" target="_blank">
<i class="fas fa-bolt"></i> EurekAlert!
</a>
</div>
<!-- ══ AWARDS ══ -->
<div class="section-title">Awards & Honors</div>
<div class="award-item">
<div class="award-icon"><i class="fas fa-book-open"></i></div>
<div class="award-text">
<strong>PNAS Journal Cover</strong> — Cover article of <em>PNAS</em> Vol. 122, No. 19, May 13, 2025.
</div>
</div>
<div class="award-item">
<div class="award-icon"><i class="fas fa-plane"></i></div>
<div class="award-text">
<strong>ASPLOS 2024 Travel Grant</strong> — awarded to attend ACM ASPLOS, San Diego, CA, Apr 2024.
</div>
</div>
<div class="award-item">
<div class="award-icon"><i class="fas fa-medal"></i></div>
<div class="award-text">
<strong><a href="https://www2.daad.de/deutschland/stipendium/datenbank/en/21148-scholarship-database/?detail=50015295" target="_blank">DAAD WISE Scholarship</a></strong>
— German Academic Exchange Service scholarship for summer research at the <a href="https://www.uni-bremen.de/en/" target="_blank">University of Bremen, Germany</a>, 2018.
</div>
</div>
<!-- ══ TALKS ══ -->
<div class="section-title">Talks & Presentations</div>
<div class="talk-item">
<span class="talk-badge badge-talk">Talk</span>
<div class="talk-text">
<strong>DP-HLS: A High-Level Synthesis Framework for Accelerating Dynamic Programming Algorithms in Bioinformatics</strong><br>
<a href="https://hpca-conf.org/2026/" target="_blank">IEEE HPCA 2026</a> — Sydney, Australia, Feb 2026.
</div>
</div>
<div class="talk-item">
<span class="talk-badge badge-talk">Talk</span>
<div class="talk-text">
<strong>ROADIES: Automated Species Tree Inference from Raw Genome Assemblies</strong><br>
<a href="https://www.iscb.org/ismb2024/home" target="_blank">ISMB 2024</a> — Montreal, Canada, Jul 2024.
</div>
</div>
<div class="talk-item">
<span class="talk-badge badge-poster">Poster</span>
<div class="talk-text">
<strong>ROADIES: Automated Species Tree Inference from Raw Genome Assemblies</strong><br>
<a href="https://jacobsschool.ucsd.edu/research-expo" target="_blank">UC San Diego Research Expo 2024</a> — La Jolla, CA, Apr 2024.
</div>
</div>
<!-- ══ SERVICE ══ -->
<div class="section-title">Service</div>
<div class="service-item">
<div class="service-dot"></div>
<div class="service-text">
<strong>Artifact Evaluation Committee</strong>, <a href="https://iscaconf.org/isca2025/" target="_blank">ISCA 2025</a>.
</div>
</div>
<div class="service-item">
<div class="service-dot"></div>
<div class="service-text">
<strong>Reviewer</strong>, <a href="https://academic.oup.com/bioinformatics" target="_blank">Bioinformatics</a> (Oxford Academic).
</div>
</div>
<div class="service-item">
<div class="service-dot"></div>
<div class="service-text">
<strong>Workshop Co-organizer</strong>, <a href="https://biosys-workshop.github.io/dist/index.html" target="_blank">BioSys Workshop</a>
@ <a href="https://www.asplos-conference.org/" target="_blank">ASPLOS 2024</a> — San Diego, CA.
</div>
</div>
<div class="service-item">
<div class="service-dot"></div>
<div class="service-text">
<strong>Artifact Evaluation Committee</strong>, <a href="https://iscaconf.org/isca2024/" target="_blank">ISCA 2024</a>.
</div>
</div>
<!-- ══ COLLABORATIONS ══ -->
<div class="section-title">Collaborations</div>
<div class="collab-grid">
<a class="collab-chip" href="https://vertebrategenomesproject.org/" target="_blank">
<i class="fas fa-dna"></i> Vertebrate Genomes Project (VGP)
</a>
<a class="collab-chip" href="https://scripps.ucsd.edu/" target="_blank">
<i class="fas fa-water"></i> Scripps Institution of Oceanography, UCSD
</a>
<a class="collab-chip" href="https://turakhia.ucsd.edu/" target="_blank">
<i class="fas fa-microchip"></i> Turakhia Lab, UCSD
</a>
<a class="collab-chip" href="http://eceweb.ucsd.edu/~smirarab/" target="_blank">
<i class="fas fa-tree"></i> Mirarab Lab, UCSD
</a>
<a class="collab-chip" href="https://www.amd.com/en/corporate/research.html" target="_blank">
<i class="fas fa-server"></i> AMD Omics Group
</a>
</div>
<!-- ══ NEWS ══ -->
<div class="section-title" style="display:flex;align-items:center;justify-content:space-between;">
<span>News</span>
<a href="/news/" style="font-size:0.75rem;font-weight:500;letter-spacing:0;text-transform:none;">All news →</a>
</div>
<div class="news-item">
<span class="news-date">Feb 2026</span>
<span class="news-text">
Presented <a href="https://ieeexplore.ieee.org/abstract/document/11408544" target="_blank">DP-HLS</a>
at <strong>IEEE HPCA 2026</strong> in Sydney, Australia.
</span>
</div>
<div class="news-item">
<span class="news-date">Jun 2025</span>
<span class="news-text">
Started research internship at <a href="https://www.amd.com/en/corporate/research.html" target="_blank"><strong>AMD Research & Advanced Development (RAD)</strong></a>, San Jose, CA.
</span>
</div>
<div class="news-item">
<span class="news-date">May 2025</span>
<span class="news-text">
<a href="https://turakhia.ucsd.edu/ROADIES/" target="_blank">ROADIES</a> published in
<a href="https://www.pnas.org/toc/pnas/122/19" target="_blank"><strong>PNAS</strong></a>
and selected as the <strong>journal cover</strong> (Vol. 122, No. 19). Featured in <a href="https://today.ucsd.edu/story/a-fully-automated-tool-for-species-tree-inference" target="_blank">UCSD Today</a>.
</span>
</div>
<div class="news-item">
<span class="news-date">Jul 2024</span>
<span class="news-text">
Presented talk on <a href="https://turakhia.ucsd.edu/ROADIES/" target="_blank">ROADIES</a>
at <a href="https://www.iscb.org/ismb2024/home" target="_blank"><strong>ISMB 2024</strong></a>, Montreal, Canada.
</span>
</div>
<div class="news-item">
<span class="news-date">Apr 2024</span>
<span class="news-text">
Awarded <strong>ASPLOS 2024 Travel Grant</strong>. Co-organized the 1st
<a href="https://biosys-workshop.github.io/dist/index.html" target="_blank">BioSys workshop</a> at ASPLOS 2024, San Diego.
</span>
</div>
<div class="news-item">
<span class="news-date">Apr 2024</span>
<span class="news-text">
Presented poster on <a href="https://turakhia.ucsd.edu/ROADIES/" target="_blank">ROADIES</a>
at <a href="https://jacobsschool.ucsd.edu/research-expo" target="_blank"><strong>UC San Diego Research Expo 2024</strong></a>.
</span>
</div>
<div class="news-item">
<span class="news-date">Mar 2024</span>
<span class="news-text">
Served on Artifact Evaluation Committee for <a href="https://iscaconf.org/isca2024/" target="_blank"><strong>ISCA 2024</strong></a>.
</span>
</div>
<div class="news-item">
<span class="news-date">Sep 2023</span>
<span class="news-text">
Completed 3-month summer internship at <a href="https://www.analog.com/" target="_blank"><strong>Analog Devices, Inc.</strong></a>, Wilmington, MA.
</span>
</div>
<div class="news-item">
<span class="news-date">Nov 2022</span>
<span class="news-text">
Joined <a href="https://turakhia.ucsd.edu/" target="_blank"><strong>Turakhia Lab</strong></a> as a PhD student at UC San Diego.
</span>
</div>
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