singleCellTK/DESCRIPTION at master · adlewismbb/singleCellTK · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
Package: singleCellTK
Type: Package
Title: Interactive Analysis of Single Cell RNA-Seq Data
Version: 1.1.5
Author: David Jenkins
Authors@R: c(person(given="David", family="Jenkins", email="dfj@bu.edu", role=c("aut","cre")),
             person(given=c("Tyler"), family="Faits", email="tfaits@bu.edu", role=c("aut")),
             person(given=c("Emma"), family="Briars", email="tfaits@bu.edu", role=c("aut")),
             person(given=c("Sebastian"), family="Carrasco Pro", email="abild@coh.org", role=c("aut")),
             person(given=c("W.", "Evan"), family="Johnson", email="wej@bu.edu", role=c("aut")))
Maintainer: David Jenkins <dfj@bu.edu>
Depends:
    R (>= 3.5),
    SummarizedExperiment,
    SingleCellExperiment,
    DelayedArray,
    Biobase
Description: Run common single cell analysis directly through your browser
    including differential expression, downsampling analysis, and clustering.
License: MIT + file LICENSE
biocViews: SingleCell, GeneExpression, DifferentialExpression, Alignment,
    Clustering
LazyData: TRUE
Imports:
    ape,
    colourpicker,
    cluster,
    ComplexHeatmap,
    data.table,
    DESeq2,
    DT,
    ggplot2,
    ggtree,
    gridExtra,
    GSVA (>= 1.26.0),
    GSVAdata,
    limma,
    MAST,
    matrixStats,
    methods,
    multtest,
    plotly,
    RColorBrewer,
    Rtsne,
    S4Vectors,
    shiny,
    shinyjs,
    sva,
    reshape2,
    AnnotationDbi,
    shinyalert,
    circlize
RoxygenNote: 6.0.1
Suggests:
    testthat,
    Rsubread,
    BiocStyle,
    knitr,
    bladderbatch,
    rmarkdown,
    org.Mm.eg.db,
    org.Hs.eg.db,
    scRNAseq,
    xtable
VignetteBuilder: knitr
URL: https://compbiomed.github.io/sctk_docs/
BugReports: https://github.com/compbiomed/singleCellTK/issues