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3440 lines (3390 loc) · 229 KB
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VFBquery functions patched with caching support
VFBquery: SOLR caching enabled by default (3-month TTL)
Disable with: export VFBQUERY_CACHE_ENABLED=false
VFBquery functions patched with caching support
VFBquery: SOLR caching enabled by default (3-month TTL)
Disable with: export VFBQUERY_CACHE_ENABLED=false
DEBUG: Executing term_info with full results for caching
DEBUG: Checking cache for term_info, term_id=FBbt_00003748, cache_term_id=FBbt_00003748_preview_True, should_cache=True
DEBUG: Attempting cache lookup for term_info(FBbt_00003748_preview_True) with full results
DEBUG: Cache lookup result: False
DEBUG: Executing term_info with full results for caching
DEBUG: Checking cache for instances, term_id=FBbt_00003748, cache_term_id=FBbt_00003748, should_cache=FalseDEBUG: Checking cache for neurons_part_here, term_id=FBbt_00003748, cache_term_id=FBbt_00003748, should_cache=FalseDEBUG: Checking cache for neurons_synaptic, term_id=FBbt_00003748, cache_term_id=FBbt_00003748, should_cache=False
DEBUG: Checking cache for neurons_postsynaptic, term_id=FBbt_00003748, cache_term_id=FBbt_00003748, should_cache=False
DEBUG: Checking cache for subclasses_of, term_id=FBbt_00003748, cache_term_id=FBbt_00003748, should_cache=FalseDEBUG: Checking cache for tracts_nerves_innervating_here, term_id=FBbt_00003748, cache_term_id=FBbt_00003748, should_cache=FalseDEBUG: Checking cache for neurons_presynaptic, term_id=FBbt_00003748, cache_term_id=FBbt_00003748, should_cache=False
DEBUG: Checking cache for images_neurons, term_id=FBbt_00003748, cache_term_id=FBbt_00003748, should_cache=False
DEBUG: Attempting cache lookup for subclasses_of(FBbt_00003748) with full results
DEBUG: Attempting cache lookup for neurons_presynaptic(FBbt_00003748) with full results
DEBUG: Attempting cache lookup for neurons_synaptic(FBbt_00003748) with full resultsDEBUG: Checking cache for lineage_clones_in, term_id=FBbt_00003748, cache_term_id=FBbt_00003748, should_cache=False
DEBUG: Checking cache for parts_of, term_id=FBbt_00003748, cache_term_id=FBbt_00003748, should_cache=FalseDEBUG: Attempting cache lookup for neurons_part_here(FBbt_00003748) with full results
DEBUG: Attempting cache lookup for neurons_postsynaptic(FBbt_00003748) with full resultsDEBUG: Attempting cache lookup for tracts_nerves_innervating_here(FBbt_00003748) with full results
DEBUG: Attempting cache lookup for instances(FBbt_00003748) with full resultsDEBUG: Attempting cache lookup for lineage_clones_in(FBbt_00003748) with full results
DEBUG: Attempting cache lookup for parts_of(FBbt_00003748) with full results
DEBUG: Attempting cache lookup for images_neurons(FBbt_00003748) with full results
✅ Neo4j connection established
DEBUG: Cache lookup result: False
✅ Neo4j connection established
DEBUG: Cache lookup result: True
DEBUG: Sliced cached dict result to 5 rows
DEBUG: Cache lookup result: True
DEBUG: Cache lookup result: TrueDEBUG: Sliced cached dict result to 5 rows
DEBUG: Sliced cached dict result to 5 rows
DEBUG: Cache lookup result: True
DEBUG: Sliced cached dict result to 5 rows
DEBUG: Cache lookup result: True
DEBUG: Sliced cached dict result to 5 rows
DEBUG: Cache lookup result: True
DEBUG: Cache lookup result: True
DEBUG: Sliced cached dict result to 5 rowsDEBUG: Sliced cached dict result to 5 rows
DEBUG: Cache lookup result: True
DEBUG: Sliced cached dict result to 5 rows
DEBUG: Cache lookup result: True
DEBUG: Sliced cached dict result to 5 rows
DEBUG: Checking cache for term_info, term_id=VFB_00000001, cache_term_id=VFB_00000001_preview_True, should_cache=True
DEBUG: Attempting cache lookup for term_info(VFB_00000001_preview_True) with full results
DEBUG: Cache lookup result: True
DEBUG: Checking cache for term_info, term_id=VFB_00101567, cache_term_id=VFB_00101567_preview_True, should_cache=True
DEBUG: Attempting cache lookup for term_info(VFB_00101567_preview_True) with full results
DEBUG: Cache lookup result: True
DEBUG: Checking cache for instances, term_id=FBbt_00003748, cache_term_id=FBbt_00003748, should_cache=True
DEBUG: Attempting cache lookup for instances(FBbt_00003748) with full results
DEBUG: Cache lookup result: True
DEBUG: Checking cache for templates, term_id=all_templates, cache_term_id=all_templates, should_cache=True
DEBUG: Attempting cache lookup for templates(all_templates) with full results
DEBUG: Cache lookup result: True
Found 5 Python code blocks
Found 5 JSON blocks
Example #1:
README query: {'Name': 'medulla', 'Id': 'FBbt_00003748', 'SuperTypes': ['Entity', 'Class', 'Adult', 'Anatomy', 'Nervous_system', 'Synaptic_neuropil', 'Synaptic_neuropil_domain', 'Visual_system'], 'Meta': {'Name': '[medulla](FBbt_00003748)', 'Description': 'The second optic neuropil, sandwiched between the lamina and the lobula complex. It is divided into 10 layers: 1-6 make up the outer (distal) medulla, the seventh (or serpentine) layer exhibits a distinct architecture and layers 8-10 make up the inner (proximal) medulla (Ito et al., 2014).', 'Comment': 'Nern et al. (2025) - doi:10.1038/s41586-025-08746-0 say distal is M1-5 and M6-7 is central medulla.', 'Types': '[anterior ectoderm derivative](FBbt_00025991); [synaptic neuropil domain](FBbt_00040007)', 'Relationships': '[develops from](RO_0002202): [medulla anlage](FBbt_00001935); [is part of](BFO_0000050): [adult optic lobe](FBbt_00003701)'}, 'Tags': ['Adult', 'Nervous_system', 'Synaptic_neuropil_domain', 'Visual_system'], 'Queries': [{'query': 'ListAllAvailableImages', 'label': 'List all available images of medulla', 'function': 'get_instances', 'takes': {'short_form': {'$and': ['Class', 'Anatomy']}, 'default': {'short_form': 'FBbt_00003748'}}, 'preview': 5, 'preview_columns': ['id', 'label', 'tags', 'thumbnail'], 'preview_results': {'headers': {'id': {'title': 'Add', 'type': 'selection_id', 'order': -1}, 'label': {'title': 'Name', 'type': 'markdown', 'order': 0, 'sort': {'0': 'Asc'}}, 'tags': {'title': 'Gross Types', 'type': 'tags', 'order': 3}, 'thumbnail': {'title': 'Thumbnail', 'type': 'markdown', 'order': 9}}, 'rows': [{'id': 'VFB_00102107', 'label': '[ME on JRC2018Unisex adult brain](VFB_00102107)', 'tags': 'Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain', 'thumbnail': '[](VFB_00101567,VFB_00102107)'}, {'id': 'VFB_00101385', 'label': '[ME(R) on JRC_FlyEM_Hemibrain](VFB_00101385)', 'tags': 'Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain', 'thumbnail': '[](VFB_00101384,VFB_00101385)'}, {'id': 'VFB_00030810', 'label': '[medulla on adult brain template Ito2014](VFB_00030810)', 'tags': 'Nervous_system|Visual_system|Adult|Synaptic_neuropil_domain', 'thumbnail': '[](VFB_00030786,VFB_00030810)'}, {'id': 'VFB_00030624', 'label': '[medulla on adult brain template JFRC2](VFB_00030624)', 'tags': 'Nervous_system|Visual_system|Adult|Synaptic_neuropil_domain', 'thumbnail': '[](VFB_00017894,VFB_00030624)'}]}, 'output_format': 'table', 'count': 4}, {'query': 'NeuronsPartHere', 'label': 'Neurons with some part in medulla', 'function': 'get_neurons_with_part_in', 'takes': {'short_form': {'$and': ['Class', 'Anatomy']}, 'default': {'short_form': 'FBbt_00003748'}}, 'preview': 5, 'preview_columns': ['id', 'label', 'tags', 'thumbnail'], 'preview_results': {'headers': {'id': {'title': 'Add', 'type': 'selection_id', 'order': -1}, 'label': {'title': 'Name', 'type': 'markdown', 'order': 0, 'sort': {0: 'Asc'}}, 'tags': {'title': 'Tags', 'type': 'tags', 'order': 2}, 'thumbnail': {'title': 'Thumbnail', 'type': 'markdown', 'order': 9}}, 'rows': [{'id': 'FBbt_00110142', 'label': '[OA-AL2i2](FBbt_00110142)', 'tags': 'Adult|Nervous_system|Octopaminergic', 'thumbnail': "[](FBbt_00110142)"}, {'id': 'FBbt_00110143', 'label': '[OA-AL2i3](FBbt_00110143)', 'tags': 'Adult|Nervous_system|Octopaminergic|Visual_system', 'thumbnail': "[](FBbt_00110143)"}, {'id': 'FBbt_00110144', 'label': '[OA-AL2i4](FBbt_00110144)', 'tags': 'Adult|Nervous_system|Octopaminergic', 'thumbnail': "[ aligned to JRC2018U')](FBbt_00110144)"}, {'id': 'FBbt_00110033', 'label': '[medulla intrinsic neuron vGlutMinew1a](FBbt_00110033)', 'tags': 'Adult|Glutamatergic|Nervous_system|Visual_system', 'thumbnail': ''}, {'id': 'FBbt_00053385', 'label': '[medulla intrinsic neuron](FBbt_00053385)', 'tags': 'Adult|Nervous_system|Neuron|Visual_system', 'thumbnail': "[](FBbt_00053385)"}]}, 'output_format': 'table', 'count': 472}, {'query': 'NeuronsSynaptic', 'label': 'Neurons with synaptic terminals in medulla', 'function': 'get_neurons_with_synapses_in', 'takes': {'short_form': {'$and': ['Class', 'Anatomy']}, 'default': {'short_form': 'FBbt_00003748'}}, 'preview': 5, 'preview_columns': ['id', 'label', 'tags', 'thumbnail'], 'preview_results': {'headers': {'id': {'title': 'Add', 'type': 'selection_id', 'order': -1}, 'label': {'title': 'Name', 'type': 'markdown', 'order': 0, 'sort': {'0': 'Asc'}}, 'tags': {'title': 'Tags', 'type': 'tags', 'order': 2}, 'thumbnail': {'title': 'Thumbnail', 'type': 'markdown', 'order': 9}}, 'rows': [{'id': 'FBbt_00110142', 'label': '[OA-AL2i2](FBbt_00110142)', 'tags': 'Adult|Nervous_system|Octopaminergic', 'thumbnail': "[](FBbt_00110142)"}, {'id': 'FBbt_00110143', 'label': '[OA-AL2i3](FBbt_00110143)', 'tags': 'Adult|Nervous_system|Octopaminergic|Visual_system', 'thumbnail': "[](FBbt_00110143)"}, {'id': 'FBbt_00110144', 'label': '[OA-AL2i4](FBbt_00110144)', 'tags': 'Adult|Nervous_system|Octopaminergic', 'thumbnail': "[ aligned to JRC2018U')](FBbt_00110144)"}, {'id': 'FBbt_00110033', 'label': '[medulla intrinsic neuron vGlutMinew1a](FBbt_00110033)', 'tags': 'Adult|Glutamatergic|Nervous_system|Visual_system', 'thumbnail': ''}, {'id': 'FBbt_00053385', 'label': '[medulla intrinsic neuron](FBbt_00053385)', 'tags': 'Adult|Nervous_system|Neuron|Visual_system', 'thumbnail': "[](FBbt_00053385)"}]}, 'output_format': 'table', 'count': 465}, {'query': 'NeuronsPresynapticHere', 'label': 'Neurons with presynaptic terminals in medulla', 'function': 'get_neurons_with_presynaptic_terminals_in', 'takes': {'short_form': {'$and': ['Class', 'Anatomy']}, 'default': {'short_form': 'FBbt_00003748'}}, 'preview': 5, 'preview_columns': ['id', 'label', 'tags', 'thumbnail'], 'preview_results': {'headers': {'id': {'title': 'Add', 'type': 'selection_id', 'order': -1}, 'label': {'title': 'Name', 'type': 'markdown', 'order': 0, 'sort': {'0': 'Asc'}}, 'tags': {'title': 'Tags', 'type': 'tags', 'order': 2}, 'thumbnail': {'title': 'Thumbnail', 'type': 'markdown', 'order': 9}}, 'rows': [{'id': 'FBbt_20007253', 'label': '[CB3838](FBbt_20007253)', 'tags': 'Adult|GABAergic|Nervous_system|Visual_system', 'thumbnail': "[](FBbt_20007253)"}, {'id': 'FBbt_20007256', 'label': '[Cm31a](FBbt_20007256)', 'tags': 'Adult|GABAergic|Nervous_system|Visual_system', 'thumbnail': "[](FBbt_20007256)"}, {'id': 'FBbt_20007258', 'label': '[Cm35](FBbt_20007258)', 'tags': 'Adult|GABAergic|Nervous_system|Visual_system', 'thumbnail': "[](FBbt_20007258)"}, {'id': 'FBbt_20007257', 'label': '[Mi19](FBbt_20007257)', 'tags': 'Adult|Nervous_system|Neuron|Visual_system', 'thumbnail': "[](FBbt_20007257)"}, {'id': 'FBbt_02000003', 'label': '[yR8](FBbt_02000003)', 'tags': 'Adult|Cholinergic|Histaminergic|Nervous_system|Sensory_neuron|Visual_system', 'thumbnail': "[ aligned to JRC2018U')](FBbt_02000003)"}]}, 'output_format': 'table', 'count': 253}, {'query': 'NeuronsPostsynapticHere', 'label': 'Neurons with postsynaptic terminals in medulla', 'function': 'get_neurons_with_postsynaptic_terminals_in', 'takes': {'short_form': {'$and': ['Class', 'Anatomy']}, 'default': {'short_form': 'FBbt_00003748'}}, 'preview': 5, 'preview_columns': ['id', 'label', 'tags', 'thumbnail'], 'preview_results': {'headers': {'id': {'title': 'Add', 'type': 'selection_id', 'order': -1}, 'label': {'title': 'Name', 'type': 'markdown', 'order': 0, 'sort': {'0': 'Asc'}}, 'tags': {'title': 'Tags', 'type': 'tags', 'order': 2}, 'thumbnail': {'title': 'Thumbnail', 'type': 'markdown', 'order': 9}}, 'rows': [{'id': 'FBbt_20007253', 'label': '[CB3838](FBbt_20007253)', 'tags': 'Adult|GABAergic|Nervous_system|Visual_system', 'thumbnail': "[](FBbt_20007253)"}, {'id': 'FBbt_20007256', 'label': '[Cm31a](FBbt_20007256)', 'tags': 'Adult|GABAergic|Nervous_system|Visual_system', 'thumbnail': "[](FBbt_20007256)"}, {'id': 'FBbt_20007259', 'label': '[Cm32](FBbt_20007259)', 'tags': 'Adult|GABAergic|Nervous_system|Visual_system', 'thumbnail': "[](FBbt_20007259)"}, {'id': 'FBbt_20007258', 'label': '[Cm35](FBbt_20007258)', 'tags': 'Adult|GABAergic|Nervous_system|Visual_system', 'thumbnail': "[](FBbt_20007258)"}, {'id': 'FBbt_20007257', 'label': '[Mi19](FBbt_20007257)', 'tags': 'Adult|Nervous_system|Neuron|Visual_system', 'thumbnail': "[](FBbt_20007257)"}]}, 'output_format': 'table', 'count': 331}, {'query': 'PartsOf', 'label': 'Parts of medulla', 'function': 'get_parts_of', 'takes': {'short_form': {'$and': ['Class']}, 'default': {'short_form': 'FBbt_00003748'}}, 'preview': 5, 'preview_columns': ['id', 'label', 'tags', 'thumbnail'], 'preview_results': {'headers': {'id': {'title': 'Add', 'type': 'selection_id', 'order': -1}, 'label': {'title': 'Name', 'type': 'markdown', 'order': 0, 'sort': {'0': 'Asc'}}, 'tags': {'title': 'Tags', 'type': 'tags', 'order': 2}, 'thumbnail': {'title': 'Thumbnail', 'type': 'markdown', 'order': 9}}, 'rows': [{'id': 'FBbt_00003750', 'label': '[medulla layer M1](FBbt_00003750)', 'tags': 'Adult|Nervous_system|Synaptic_neuropil_subdomain|Visual_system', 'thumbnail': ''}, {'id': 'FBbt_00003753', 'label': '[medulla layer M4](FBbt_00003753)', 'tags': 'Adult|Nervous_system|Synaptic_neuropil_subdomain|Visual_system', 'thumbnail': ''}, {'id': 'FBbt_00003754', 'label': '[medulla layer M5](FBbt_00003754)', 'tags': 'Adult|Nervous_system|Synaptic_neuropil_subdomain|Visual_system', 'thumbnail': ''}, {'id': 'FBbt_00003758', 'label': '[medulla layer M8](FBbt_00003758)', 'tags': 'Adult|Nervous_system|Synaptic_neuropil_subdomain|Visual_system', 'thumbnail': ''}, {'id': 'FBbt_00003759', 'label': '[medulla layer M9](FBbt_00003759)', 'tags': 'Adult|Nervous_system|Synaptic_neuropil_subdomain|Visual_system', 'thumbnail': ''}]}, 'output_format': 'table', 'count': 28}, {'query': 'SubclassesOf', 'label': 'Subclasses of medulla', 'function': 'get_subclasses_of', 'takes': {'short_form': {'$and': ['Class']}, 'default': {'short_form': 'FBbt_00003748'}}, 'preview': 5, 'preview_columns': ['id', 'label', 'tags', 'thumbnail'], 'preview_results': {'headers': {'id': {'title': 'Add', 'type': 'selection_id', 'order': -1}, 'label': {'title': 'Name', 'type': 'markdown', 'order': 0, 'sort': {'0': 'Asc'}}, 'tags': {'title': 'Tags', 'type': 'tags', 'order': 2}, 'thumbnail': {'title': 'Thumbnail', 'type': 'markdown', 'order': 9}}, 'rows': []}, 'output_format': 'table', 'count': 0}, {'query': 'TractsNervesInnervatingHere', 'label': 'Tracts/nerves innervating medulla', 'function': 'get_tracts_nerves_innervating_here', 'takes': {'short_form': {'$or': [{'$and': ['Class', 'Synaptic_neuropil']}, {'$and': ['Class', 'Synaptic_neuropil_domain']}]}, 'default': {'short_form': 'FBbt_00003748'}}, 'preview': 5, 'preview_columns': ['id', 'label', 'tags', 'thumbnail'], 'preview_results': {'headers': {'id': {'title': 'Add', 'type': 'selection_id', 'order': -1}, 'label': {'title': 'Name', 'type': 'markdown', 'order': 0, 'sort': {'0': 'Asc'}}, 'tags': {'title': 'Tags', 'type': 'tags', 'order': 2}, 'thumbnail': {'title': 'Thumbnail', 'type': 'markdown', 'order': 9}}, 'rows': [{'id': 'FBbt_00005810', 'label': '[first optic chiasma](FBbt_00005810)', 'tags': 'Adult|Nervous_system|Neuron_projection_bundle|Visual_system', 'thumbnail': ''}, {'id': 'FBbt_00007427', 'label': '[posterior optic commissure](FBbt_00007427)', 'tags': 'Adult|Nervous_system|Neuron_projection_bundle', 'thumbnail': "[](FBbt_00007427)"}, {'id': 'FBbt_00003922', 'label': '[second optic chiasma](FBbt_00003922)', 'tags': 'Adult|Nervous_system|Neuron_projection_bundle|Visual_system', 'thumbnail': ''}]}, 'output_format': 'table', 'count': 3}, {'query': 'LineageClonesIn', 'label': 'Lineage clones found in medulla', 'function': 'get_lineage_clones_in', 'takes': {'short_form': {'$and': ['Class', 'Synaptic_neuropil']}, 'default': {'short_form': 'FBbt_00003748'}}, 'preview': 5, 'preview_columns': ['id', 'label', 'tags', 'thumbnail'], 'preview_results': {'headers': {'id': {'title': 'Add', 'type': 'selection_id', 'order': -1}, 'label': {'title': 'Name', 'type': 'markdown', 'order': 0, 'sort': {'0': 'Asc'}}, 'tags': {'title': 'Tags', 'type': 'tags', 'order': 2}, 'thumbnail': {'title': 'Thumbnail', 'type': 'markdown', 'order': 9}}, 'rows': [{'id': 'FBbt_00050019', 'label': '[adult DM1 lineage clone](FBbt_00050019)', 'tags': 'Adult|Clone|lineage_DPMm1', 'thumbnail': "[](FBbt_00050019)"}, {'id': 'FBbt_00050143', 'label': '[adult DM6 lineage clone](FBbt_00050143)', 'tags': 'Adult|Clone|lineage_CM3', 'thumbnail': "[](FBbt_00050143)"}, {'id': 'FBbt_00050167', 'label': '[adult LALv1 lineage clone](FBbt_00050167)', 'tags': 'Adult|Clone|lineage_BAmv1', 'thumbnail': "[](FBbt_00050167)"}, {'id': 'FBbt_00050051', 'label': '[adult VESa2 lineage clone](FBbt_00050051)', 'tags': 'Adult|Clone|lineage_BAlp1', 'thumbnail': "[](FBbt_00050051)"}, {'id': 'FBbt_00050013', 'label': '[adult VPNl&d1 lineage clone](FBbt_00050013)', 'tags': 'Adult|Clone', 'thumbnail': "[](FBbt_00050013)"}]}, 'output_format': 'table', 'count': 7}, {'query': 'ImagesNeurons', 'label': 'Images of neurons with some part in medulla', 'function': 'get_images_neurons', 'takes': {'short_form': {'$or': [{'$and': ['Class', 'Synaptic_neuropil']}, {'$and': ['Class', 'Synaptic_neuropil_domain']}]}, 'default': {'short_form': 'FBbt_00003748'}}, 'preview': 5, 'preview_columns': ['id', 'label', 'tags', 'thumbnail'], 'preview_results': {'headers': {'id': {'title': 'Add', 'type': 'selection_id', 'order': -1}, 'label': {'title': 'Name', 'type': 'markdown', 'order': 0, 'sort': {'0': 'Asc'}}, 'tags': {'title': 'Tags', 'type': 'tags', 'order': 2}, 'thumbnail': {'title': 'Thumbnail', 'type': 'markdown', 'order': 9}}, 'rows': [{'id': 'VFB_fw113160', 'label': '[FlyWire:720575940614228963](VFB_fw113160)', 'tags': ['Adult', 'Cholinergic', 'Glutamatergic', 'Nervous_system', 'Visual_system', 'secondary_neuron'], 'thumbnail': "[](VFB_00101567,VFB_fw113160)"}, {'id': 'VFB_fw113163', 'label': '[FlyWire:720575940617552345](VFB_fw113163)', 'tags': ['Adult', 'Glutamatergic', 'Nervous_system', 'Visual_system'], 'thumbnail': "[](VFB_00101567,VFB_fw113163)"}, {'id': 'VFB_fw113161', 'label': '[FlyWire:720575940620899019](VFB_fw113161)', 'tags': ['Adult', 'Cholinergic', 'Nervous_system', 'Visual_system'], 'thumbnail': "[](VFB_00101567,VFB_fw113161)"}, {'id': 'VFB_fw113162', 'label': '[FlyWire:720575940627258493](VFB_fw113162)', 'tags': ['Adult', 'Cholinergic', 'Nervous_system', 'Visual_system'], 'thumbnail': "[](VFB_00101567,VFB_fw113162)"}, {'id': 'VFB_fw113167', 'label': '[FlyWire:720575940628422216](VFB_fw113167)', 'tags': ['Adult', 'Glutamatergic', 'Nervous_system', 'Visual_system'], 'thumbnail': "[](VFB_00101567,VFB_fw113167)"}]}, 'output_format': 'table', 'count': 119989}, {'query': 'ExpressionOverlapsHere', 'label': 'Expression patterns overlapping medulla', 'function': 'get_expression_overlaps_here', 'takes': {'short_form': {'$and': ['Class', 'Anatomy']}, 'default': {'short_form': 'FBbt_00003748'}}, 'preview': 5, 'preview_columns': ['id', 'name', 'tags', 'pubs'], 'preview_results': {'headers': {'id': {'title': 'ID', 'type': 'selection_id', 'order': -1}, 'name': {'title': 'Expression Pattern', 'type': 'markdown', 'order': 0}, 'tags': {'title': 'Tags', 'type': 'tags', 'order': 1}, 'pubs': {'title': 'Publications', 'type': 'metadata', 'order': 2}}, 'rows': [{'id': 'VFBexp_FBti0182065', 'name': '[Mi{GT-GAL4}DIP-β[MI01971-GAL4] expression pattern](VFBexp_FBti0182065)', 'tags': 'Expression_pattern', 'pubs': [{'core': {'iri': 'http://flybase.org/reports/FBrf0230454', 'symbol': '', 'types': ['Entity', 'Individual', 'pub'], 'short_form': 'FBrf0230454', 'label': 'Carrillo et al., 2015, Cell 163(7): 1770--1782'}, 'FlyBase': 'FBrf0230454', 'PubMed': '26687361', 'DOI': '10.1016/j.cell.2015.11.022'}]}, {'id': 'VFBexp_FBti0145260', 'name': '[Mi{MIC}dpr10[MI03557] expression pattern](VFBexp_FBti0145260)', 'tags': 'Expression_pattern', 'pubs': [{'core': {'iri': 'http://flybase.org/reports/FBrf0230454', 'symbol': '', 'types': ['Entity', 'Individual', 'pub'], 'short_form': 'FBrf0230454', 'label': 'Carrillo et al., 2015, Cell 163(7): 1770--1782'}, 'FlyBase': 'FBrf0230454', 'PubMed': '26687361', 'DOI': '10.1016/j.cell.2015.11.022'}]}, {'id': 'VFBexp_FBti0143547', 'name': '[PBac{544.SVS-1}Fer2LCH[CPTI100064] expression pattern](VFBexp_FBti0143547)', 'tags': 'Expression_pattern', 'pubs': [{'core': {'iri': 'http://flybase.org/reports/FBrf0215202', 'symbol': '', 'types': ['Entity', 'Individual', 'pub'], 'short_form': 'FBrf0215202', 'label': 'Knowles-Barley, 2011.8.24, BrainTrap expression curation.'}, 'FlyBase': 'FBrf0215202', 'PubMed': '', 'DOI': ''}]}, {'id': 'VFBexp_FBti0143533', 'name': '[PBac{544.SVS-1}B4[CPTI100035] expression pattern](VFBexp_FBti0143533)', 'tags': 'Expression_pattern', 'pubs': [{'core': {'iri': 'http://flybase.org/reports/FBrf0215202', 'symbol': '', 'types': ['Entity', 'Individual', 'pub'], 'short_form': 'FBrf0215202', 'label': 'Knowles-Barley, 2011.8.24, BrainTrap expression curation.'}, 'FlyBase': 'FBrf0215202', 'PubMed': '', 'DOI': ''}]}, {'id': 'VFBexp_FBti0143524', 'name': '[PBac{566.P.SVS-1}IA-2[CPTI100013] expression pattern](VFBexp_FBti0143524)', 'tags': 'Expression_pattern', 'pubs': [{'core': {'iri': 'http://flybase.org/reports/FBrf0215202', 'symbol': '', 'types': ['Entity', 'Individual', 'pub'], 'short_form': 'FBrf0215202', 'label': 'Knowles-Barley, 2011.8.24, BrainTrap expression curation.'}, 'FlyBase': 'FBrf0215202', 'PubMed': '', 'DOI': ''}]}]}, 'output_format': 'table', 'count': 2339}, {'query': 'TransgeneExpressionHere', 'label': 'Transgene expression in medulla', 'function': 'get_transgene_expression_here', 'takes': {'short_form': {'$and': ['Class', 'Nervous_system', 'Anatomy']}, 'default': {'short_form': 'FBbt_00003748'}}, 'preview': 5, 'preview_columns': ['id', 'name', 'tags'], 'preview_results': {'headers': {'id': {'title': 'ID', 'type': 'selection_id', 'order': -1}, 'name': {'title': 'Expression Pattern', 'type': 'markdown', 'order': 0}, 'tags': {'title': 'Tags', 'type': 'tags', 'order': 1}}, 'rows': [{'id': 'VFBexp_FBti0182065', 'name': '[Mi{GT-GAL4}DIP-β[MI01971-GAL4] expression pattern](VFBexp_FBti0182065)', 'tags': 'Expression_pattern'}, {'id': 'VFBexp_FBti0145260', 'name': '[Mi{MIC}dpr10[MI03557] expression pattern](VFBexp_FBti0145260)', 'tags': 'Expression_pattern'}, {'id': 'VFBexp_FBti0143547', 'name': '[PBac{544.SVS-1}Fer2LCH[CPTI100064] expression pattern](VFBexp_FBti0143547)', 'tags': 'Expression_pattern'}, {'id': 'VFBexp_FBti0143533', 'name': '[PBac{544.SVS-1}B4[CPTI100035] expression pattern](VFBexp_FBti0143533)', 'tags': 'Expression_pattern'}, {'id': 'VFBexp_FBti0143524', 'name': '[PBac{566.P.SVS-1}IA-2[CPTI100013] expression pattern](VFBexp_FBti0143524)', 'tags': 'Expression_pattern'}]}, 'output_format': 'table', 'count': 2339}], 'IsIndividual': False, 'Images': {}, 'IsClass': True, 'Examples': {'VFB_00101384': [{'id': 'VFB_00101385', 'label': 'ME(R) on JRC_FlyEM_Hemibrain', 'thumbnail': 'https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnail.png', 'thumbnail_transparent': 'https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnailT.png', 'nrrd': 'https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume.nrrd', 'wlz': 'https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume.wlz', 'obj': 'https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume_man.obj'}], 'VFB_00101567': [{'id': 'VFB_00102107', 'label': 'ME on JRC2018Unisex adult brain', 'thumbnail': 'https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnail.png', 'thumbnail_transparent': 'https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnailT.png', 'nrrd': 'https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume.nrrd', 'wlz': 'https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume.wlz', 'obj': 'https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume_man.obj'}], 'VFB_00017894': [{'id': 'VFB_00030624', 'label': 'medulla on adult brain template JFRC2', 'thumbnail': 'https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/thumbnail.png', 'thumbnail_transparent': 'https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/thumbnailT.png', 'nrrd': 'https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/volume.nrrd', 'wlz': 'https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/volume.wlz', 'obj': 'https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/volume_man.obj'}], 'VFB_00030786': [{'id': 'VFB_00030810', 'label': 'medulla on adult brain template Ito2014', 'thumbnail': 'https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/thumbnail.png', 'thumbnail_transparent': 'https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/thumbnailT.png', 'nrrd': 'https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/volume.nrrd', 'wlz': 'https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/volume.wlz', 'obj': 'https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/volume_man.obj'}]}, 'IsTemplate': False, 'Domains': {}, 'Licenses': {}, 'Publications': [], 'Synonyms': [{'label': 'ME', 'scope': 'has_exact_synonym', 'type': '', 'publication': '[Ito et al., 2014](FBrf0224194)'}, {'label': 'Med', 'scope': 'has_exact_synonym', 'type': '', 'publication': '[Chiang et al., 2011](FBrf0212704)'}, {'label': 'optic medulla', 'scope': 'has_exact_synonym', 'type': '', 'publication': '[Venkatesh and Shyamala, 2010](FBrf0212889)'}, {'label': 'm', 'scope': 'has_related_synonym', 'type': '', 'publication': ''}]}
Expected JSON name: medulla
Error in example #1:
Changed values:
['Queries'][2]['preview_results']['rows'][2]['thumbnail']:
- [](FBbt_00110142)
+ [](FBbt_00110142)
['Queries'][2]['preview_results']['rows'][3]['thumbnail']:
- [](FBbt_00110143)
+ [](FBbt_00110143)
['Queries'][2]['preview_results']['rows'][0]['thumbnail']:
- [](FBbt_00053385)
+ [](FBbt_00053385)
['Queries'][8]['preview_results']['rows'][4]['id']:
- FBbt_00050229
+ FBbt_00050143
['Queries'][8]['preview_results']['rows'][4]['label']:
- [adult SLPpl1 lineage clone](FBbt_00050229)
+ [adult DM6 lineage clone](FBbt_00050143)
['Queries'][8]['preview_results']['rows'][4]['tags']:
- Adult|Clone|lineage_DPLl1
+ Adult|Clone|lineage_CM3
['Queries'][8]['preview_results']['rows'][4]['thumbnail']:
- [](FBbt_00050229)
+ [](FBbt_00050143)
Added list items:
+['Queries'][0]['preview_results']['rows'][0]:
+id: VFB_00102107
+label: [ME on JRC2018Unisex adult brain](VFB_00102107)
+tags: Nervous_system|Adult|Visual_system|Synaptic_neurop...
+thumbnail: [![ME on JRC2018Unisex adult brain aligned to JRC2...
+['Queries'][0]['preview_results']['rows'][1]:
+id: VFB_00101385
+label: [ME(R) on JRC_FlyEM_Hemibrain](VFB_00101385)
+tags: Nervous_system|Adult|Visual_system|Synaptic_neurop...
+thumbnail: [![ME(R) on JRC_FlyEM_Hemibrain aligned to JRCFIB2...
+['Queries'][0]['preview_results']['rows'][2]:
+id: VFB_00030810
+label: [medulla on adult brain template Ito2014](VFB_0003...
+tags: Nervous_system|Visual_system|Adult|Synaptic_neurop...
+thumbnail: [![medulla on adult brain template Ito2014 aligned...
+['Queries'][0]['preview_results']['rows'][3]:
+id: VFB_00030624
+label: [medulla on adult brain template JFRC2](VFB_000306...
+tags: Nervous_system|Visual_system|Adult|Synaptic_neurop...
+thumbnail: [![medulla on adult brain template JFRC2 aligned t...
+['Queries'][1]['preview_results']['rows'][0]:
+id: FBbt_00110142
+label: [OA-AL2i2](FBbt_00110142)
+tags: Adult|Nervous_system|Octopaminergic
+thumbnail: [![FlyWire:720575940638720233 aligned to JRC2018U]...
+['Queries'][1]['preview_results']['rows'][1]:
+id: FBbt_00110143
+label: [OA-AL2i3](FBbt_00110143)
+tags: Adult|Nervous_system|Octopaminergic|Visual_system
+thumbnail: [![FlyWire:720575940616984588 aligned to JRC2018U]...
+['Queries'][1]['preview_results']['rows'][2]:
+id: FBbt_00110144
+label: [OA-AL2i4](FBbt_00110144)
+tags: Adult|Nervous_system|Octopaminergic
+thumbnail: [![OA-AL2i4_R (JRC_OpticLobe:10677) aligned to JRC...
+['Queries'][1]['preview_results']['rows'][3]:
+id: FBbt_00110033
+label: [medulla intrinsic neuron vGlutMinew1a](FBbt_00110...
+tags: Adult|Glutamatergic|Nervous_system|Visual_system
+thumbnail:
+['Queries'][1]['preview_results']['rows'][4]:
+id: FBbt_00053385
+label: [medulla intrinsic neuron](FBbt_00053385)
+tags: Adult|Nervous_system|Neuron|Visual_system
+thumbnail: [![FlyWire:720575940608324274 aligned to JRC2018U]...
+['Queries'][3]['preview_results']['rows'][0]:
+id: FBbt_20007253
+label: [CB3838](FBbt_20007253)
+tags: Adult|GABAergic|Nervous_system|Visual_system
+thumbnail: [![FlyWire:720575940622632831 aligned to JRC2018U]...
+['Queries'][3]['preview_results']['rows'][1]:
+id: FBbt_20007256
+label: [Cm31a](FBbt_20007256)
+tags: Adult|GABAergic|Nervous_system|Visual_system
+thumbnail: [![FlyWire:720575940613686698 aligned to JRC2018U]...
+['Queries'][3]['preview_results']['rows'][2]:
+id: FBbt_20007258
+label: [Cm35](FBbt_20007258)
+tags: Adult|GABAergic|Nervous_system|Visual_system
+thumbnail: [![FlyWire:720575940608235186 aligned to JRC2018U]...
+['Queries'][3]['preview_results']['rows'][3]:
+id: FBbt_20007257
+label: [Mi19](FBbt_20007257)
+tags: Adult|Nervous_system|Neuron|Visual_system
+thumbnail: [![FlyWire:720575940627785758 aligned to JRC2018U]...
+['Queries'][4]['preview_results']['rows'][0]:
+id: FBbt_20007253
+label: [CB3838](FBbt_20007253)
+tags: Adult|GABAergic|Nervous_system|Visual_system
+thumbnail: [![FlyWire:720575940622632831 aligned to JRC2018U]...
+['Queries'][4]['preview_results']['rows'][1]:
+id: FBbt_20007256
+label: [Cm31a](FBbt_20007256)
+tags: Adult|GABAergic|Nervous_system|Visual_system
+thumbnail: [![FlyWire:720575940613686698 aligned to JRC2018U]...
+['Queries'][4]['preview_results']['rows'][2]:
+id: FBbt_20007259
+label: [Cm32](FBbt_20007259)
+tags: Adult|GABAergic|Nervous_system|Visual_system
+thumbnail: [![FlyWire:720575940637291639 aligned to JRC2018U]...
+['Queries'][4]['preview_results']['rows'][3]:
+id: FBbt_20007258
+label: [Cm35](FBbt_20007258)
+tags: Adult|GABAergic|Nervous_system|Visual_system
+thumbnail: [![FlyWire:720575940608235186 aligned to JRC2018U]...
+['Queries'][4]['preview_results']['rows'][4]:
+id: FBbt_20007257
+label: [Mi19](FBbt_20007257)
+tags: Adult|Nervous_system|Neuron|Visual_system
+thumbnail: [![FlyWire:720575940627785758 aligned to JRC2018U]...
+['Queries'][9]['preview_results']['rows'][0]:
+id: VFB_fw113160
+label: [FlyWire:720575940614228963](VFB_fw113160)
+tags: ['Adult', 'Cholinergic', 'Glutamatergic', 'Nervous...
+thumbnail: [
+tags: ['Adult', 'Glutamatergic', 'Nervous_system', 'Visu...
+thumbnail: [
+tags: ['Adult', 'Cholinergic', 'Nervous_system', 'Visual...
+thumbnail: [
+tags: ['Adult', 'Cholinergic', 'Nervous_system', 'Visual...
+thumbnail: [
+tags: ['Adult', 'Glutamatergic', 'Nervous_system', 'Visu...
+thumbnail: [
-tags: Nervous_system|Adult|Visual_system|Synaptic_neurop...
-thumbnail: [![ME on JRC2018Unisex adult brain aligned to JRC2...
-['Queries'][0]['preview_results']['rows'][1]:
-id: VFB_00101385
-label: [ME(R) on JRC_FlyEM_Hemibrain](VFB_00101385)
-tags: Nervous_system|Adult|Visual_system|Synaptic_neurop...
-thumbnail: [![ME(R) on JRC_FlyEM_Hemibrain aligned to JRCFIB2...
-['Queries'][0]['preview_results']['rows'][2]:
-id: VFB_00030810
-label: [medulla on adult brain template Ito2014](VFB_0003...
-tags: Nervous_system|Visual_system|Adult|Synaptic_neurop...
-thumbnail: [![medulla on adult brain template Ito2014 aligned...
-['Queries'][0]['preview_results']['rows'][3]:
-id: VFB_00030624
-label: [medulla on adult brain template JFRC2](VFB_000306...
-tags: Nervous_system|Visual_system|Adult|Synaptic_neurop...
-thumbnail: [![medulla on adult brain template JFRC2 aligned t...
-['Queries'][1]['preview_results']['rows'][0]:
-id: FBbt_20011362
-label: [Cm1](FBbt_20011362)
-tags: Adult|Cholinergic|Nervous_system|Visual_system
-thumbnail: [![FlyWire:720575940621358986 aligned to JRC2018U]...
-['Queries'][1]['preview_results']['rows'][1]:
-id: FBbt_20011363
-label: [Cm10](FBbt_20011363)
-tags: Adult|GABAergic|Nervous_system|Visual_system
-thumbnail: [![FlyWire:720575940629671015 aligned to JRC2018U]...
-['Queries'][1]['preview_results']['rows'][2]:
-id: FBbt_20011364
-label: [Cm15](FBbt_20011364)
-tags: Adult|GABAergic|Nervous_system|Visual_system
-thumbnail: [![FlyWire:720575940611214802 aligned to JRC2018U]...
-['Queries'][1]['preview_results']['rows'][3]:
-id: FBbt_20011365
-label: [Cm16](FBbt_20011365)
-tags: Adult|Glutamatergic|Nervous_system|Visual_system
-thumbnail: [![FlyWire:720575940631561002 aligned to JRC2018U]...
-['Queries'][1]['preview_results']['rows'][4]:
-id: FBbt_20011366
-label: [Cm17](FBbt_20011366)
-tags: Adult|GABAergic|Nervous_system|Visual_system
-thumbnail: [![FlyWire:720575940624043817 aligned to JRC2018U]...
-['Queries'][3]['preview_results']['rows'][1]:
-id: FBbt_20007253
-label: [CB3838](FBbt_20007253)
-tags: Adult|GABAergic|Nervous_system|Visual_system
-thumbnail: [
-tags: Adult|GABAergic|Nervous_system|Visual_system
-thumbnail: [
-tags: Adult|Nervous_system|Neuron|Visual_system
-thumbnail: [
-tags: Adult|GABAergic|Nervous_system|Visual_system
-thumbnail: [
-tags: Adult|GABAergic|Nervous_system|Visual_system
-thumbnail: [
-tags: Adult|GABAergic|Nervous_system|Visual_system
-thumbnail: [
-tags: Adult|Nervous_system|Neuron|Visual_system
-thumbnail: [
-tags: Adult|GABAergic|Nervous_system|Visual_system
-thumbnail: [
-tags: Adult|GABAergic|Nervous_system|Visual_system
-thumbnail: [
-tags: Adult|Glutamatergic|Nervous_system|Visual_system
-thumbnail:
-['Queries'][9]['preview_results']['rows'][1]:
-id: VFB_fw113165
-label: [ME.17216](VFB_fw113165)
-tags: Adult|GABAergic|Nervous_system|Visual_system|secon...
-thumbnail:
-['Queries'][9]['preview_results']['rows'][2]:
-id: VFB_fw113168
-label: [ME.31287](VFB_fw113168)
-tags: Adult|Glutamatergic|Nervous_system|Visual_system
-thumbnail:
-['Queries'][9]['preview_results']['rows'][3]:
-id: VFB_fw113166
-label: [ME.4619](VFB_fw113166)
-tags: Adult|Cholinergic|Nervous_system|Visual_system|sec...
-thumbnail:
-['Queries'][9]['preview_results']['rows'][4]:
-id: VFB_fw113169
-label: [ME.26172](VFB_fw113169)
-tags: Adult|Cholinergic|Nervous_system|Visual_system|sec...
-thumbnail:
Row differences (sample):
Row 0 differences:
~ Row 0.thumbnail:
- [](VFB_00101567,VFB_00102107)
+ [](VFB_00101567,VFB_00102107)
Row 1 differences:
~ Row 1.thumbnail:
- [ on JRC_FlyEM_Hemibrain aligned to JRCFIB2018Fum')](VFB_00101384,VFB_00101385)
+ [](VFB_00101384,VFB_00101385)
Summary of differences:
Added: 0 keys, 23 list items
Removed: 0 keys, 23 list items
Changed: 7 values, 0 type changes
Suggested README update for example #2:
--- COPY FROM HERE ---
```json
{
"Name": "medulla",
"Id": "FBbt_00003748",
"SuperTypes": [
"Entity",
"Class",
"Adult",
"Anatomy",
"Nervous_system",
"Synaptic_neuropil",
"Synaptic_neuropil_domain",
"Visual_system"
],
"Meta": {
"Name": "[medulla](FBbt_00003748)",
"Description": "The second optic neuropil, sandwiched between the lamina and the lobula complex. It is divided into 10 layers: 1-6 make up the outer (distal) medulla, the seventh (or serpentine) layer exhibits a distinct architecture and layers 8-10 make up the inner (proximal) medulla (Ito et al., 2014).",
"Comment": "Nern et al. (2025) - doi:10.1038/s41586-025-08746-0 say distal is M1-5 and M6-7 is central medulla.",
"Types": "[anterior ectoderm derivative](FBbt_00025991); [synaptic neuropil domain](FBbt_00040007)",
"Relationships": "[develops from](RO_0002202): [medulla anlage](FBbt_00001935); [is part of](BFO_0000050): [adult optic lobe](FBbt_00003701)"
},
"Tags": [
"Adult",
"Nervous_system",
"Synaptic_neuropil_domain",
"Visual_system"
],
"Queries": [
{
"query": "ListAllAvailableImages",
"label": "List all available images of medulla",
"function": "get_instances",
"takes": {
"short_form": {
"$and": [
"Class",
"Anatomy"
]
},
"default": {
"short_form": "FBbt_00003748"
}
},
"preview": 5,
"preview_columns": [
"id",
"label",
"tags",
"thumbnail"
],
"preview_results": {
"headers": {
"id": {
"title": "Add",
"type": "selection_id",
"order": -1
},
"label": {
"title": "Name",
"type": "markdown",
"order": 0,
"sort": {
"0": "Asc"
}
},
"tags": {
"title": "Gross Types",
"type": "tags",
"order": 3
},
"thumbnail": {
"title": "Thumbnail",
"type": "markdown",
"order": 9
}
},
"rows": [
{
"id": "VFB_00102107",
"label": "[ME on JRC2018Unisex adult brain](VFB_00102107)",
"tags": "Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain",
"thumbnail": "[![ME on JRC2018Unisex adult brain aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnail.png \"ME on JRC2018Unisex adult brain aligned to JRC2018U\")](VFB_00101567,VFB_00102107)"
},
{
"id": "VFB_00101385",
"label": "[ME(R) on JRC_FlyEM_Hemibrain](VFB_00101385)",
"tags": "Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain",
"thumbnail": "[![ME(R) on JRC_FlyEM_Hemibrain aligned to JRCFIB2018Fum](https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnail.png \"ME(R) on JRC_FlyEM_Hemibrain aligned to JRCFIB2018Fum\")](VFB_00101384,VFB_00101385)"
},
{
"id": "VFB_00030810",
"label": "[medulla on adult brain template Ito2014](VFB_00030810)",
"tags": "Nervous_system|Visual_system|Adult|Synaptic_neuropil_domain",
"thumbnail": "[![medulla on adult brain template Ito2014 aligned to adult brain template Ito2014](https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/thumbnail.png \"medulla on adult brain template Ito2014 aligned to adult brain template Ito2014\")](VFB_00030786,VFB_00030810)"
},
{
"id": "VFB_00030624",
"label": "[medulla on adult brain template JFRC2](VFB_00030624)",
"tags": "Nervous_system|Visual_system|Adult|Synaptic_neuropil_domain",
"thumbnail": "[![medulla on adult brain template JFRC2 aligned to JFRC2](https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/thumbnail.png \"medulla on adult brain template JFRC2 aligned to JFRC2\")](VFB_00017894,VFB_00030624)"
}
]
},
"output_format": "table",
"count": 4
},
{
"query": "NeuronsPartHere",
"label": "Neurons with some part in medulla",
"function": "get_neurons_with_part_in",
"takes": {
"short_form": {
"$and": [
"Class",
"Anatomy"
]
},
"default": {
"short_form": "FBbt_00003748"
}
},
"preview": 5,
"preview_columns": [
"id",
"label",
"tags",
"thumbnail"
],
"preview_results": {
"headers": {
"id": {
"title": "Add",
"type": "selection_id",
"order": -1
},
"label": {
"title": "Name",
"type": "markdown",
"order": 0,
"sort": {
"0": "Asc"
}
},
"tags": {
"title": "Tags",
"type": "tags",
"order": 2
},
"thumbnail": {
"title": "Thumbnail",
"type": "markdown",
"order": 9
}
},
"rows": [
{
"id": "FBbt_00110142",
"label": "[OA-AL2i2](FBbt_00110142)",
"tags": "Adult|Nervous_system|Octopaminergic",
"thumbnail": "[](FBbt_00110142)"
},
{
"id": "FBbt_00110143",
"label": "[OA-AL2i3](FBbt_00110143)",
"tags": "Adult|Nervous_system|Octopaminergic|Visual_system",
"thumbnail": "[](FBbt_00110143)"
},
{
"id": "FBbt_00110144",
"label": "[OA-AL2i4](FBbt_00110144)",
"tags": "Adult|Nervous_system|Octopaminergic",
"thumbnail": "[ aligned to JRC2018U')](FBbt_00110144)"
},
{
"id": "FBbt_00110033",
"label": "[medulla intrinsic neuron vGlutMinew1a](FBbt_00110033)",
"tags": "Adult|Glutamatergic|Nervous_system|Visual_system",
"thumbnail": ""
},
{
"id": "FBbt_00053385",
"label": "[medulla intrinsic neuron](FBbt_00053385)",
"tags": "Adult|Nervous_system|Neuron|Visual_system",
"thumbnail": "[](FBbt_00053385)"
}
]
},
"output_format": "table",
"count": 472
},
{
"query": "NeuronsSynaptic",
"label": "Neurons with synaptic terminals in medulla",
"function": "get_neurons_with_synapses_in",
"takes": {
"short_form": {
"$and": [
"Class",
"Anatomy"
]
},
"default": {
"short_form": "FBbt_00003748"
}
},
"preview": 5,
"preview_columns": [
"id",
"label",
"tags",
"thumbnail"
],
"preview_results": {
"headers": {
"id": {
"title": "Add",
"type": "selection_id",
"order": -1
},
"label": {
"title": "Name",
"type": "markdown",
"order": 0,
"sort": {
"0": "Asc"
}
},
"tags": {
"title": "Tags",
"type": "tags",
"order": 2
},
"thumbnail": {
"title": "Thumbnail",
"type": "markdown",
"order": 9
}
},
"rows": [
{
"id": "FBbt_00110142",
"label": "[OA-AL2i2](FBbt_00110142)",
"tags": "Adult|Nervous_system|Octopaminergic",
"thumbnail": "[](FBbt_00110142)"
},
{
"id": "FBbt_00110143",
"label": "[OA-AL2i3](FBbt_00110143)",
"tags": "Adult|Nervous_system|Octopaminergic|Visual_system",
"thumbnail": "[](FBbt_00110143)"
},
{
"id": "FBbt_00110144",
"label": "[OA-AL2i4](FBbt_00110144)",
"tags": "Adult|Nervous_system|Octopaminergic",
"thumbnail": "[ aligned to JRC2018U')](FBbt_00110144)"
},
{
"id": "FBbt_00110033",
"label": "[medulla intrinsic neuron vGlutMinew1a](FBbt_00110033)",
"tags": "Adult|Glutamatergic|Nervous_system|Visual_system",
"thumbnail": ""
},
{
"id": "FBbt_00053385",
"label": "[medulla intrinsic neuron](FBbt_00053385)",
"tags": "Adult|Nervous_system|Neuron|Visual_system",
"thumbnail": "[](FBbt_00053385)"
}
]
},
"output_format": "table",
"count": 465
},
{
"query": "NeuronsPresynapticHere",
"label": "Neurons with presynaptic terminals in medulla",
"function": "get_neurons_with_presynaptic_terminals_in",
"takes": {
"short_form": {
"$and": [
"Class",
"Anatomy"
]
},
"default": {
"short_form": "FBbt_00003748"
}
},
"preview": 5,
"preview_columns": [
"id",
"label",
"tags",
"thumbnail"
],
"preview_results": {
"headers": {
"id": {
"title": "Add",
"type": "selection_id",
"order": -1
},
"label": {
"title": "Name",
"type": "markdown",
"order": 0,
"sort": {
"0": "Asc"
}
},
"tags": {
"title": "Tags",
"type": "tags",
"order": 2
},
"thumbnail": {
"title": "Thumbnail",
"type": "markdown",
"order": 9
}
},
"rows": [
{
"id": "FBbt_20007253",
"label": "[CB3838](FBbt_20007253)",
"tags": "Adult|GABAergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20007253)"
},
{
"id": "FBbt_20007256",
"label": "[Cm31a](FBbt_20007256)",
"tags": "Adult|GABAergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20007256)"
},
{
"id": "FBbt_20007258",
"label": "[Cm35](FBbt_20007258)",
"tags": "Adult|GABAergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20007258)"
},
{
"id": "FBbt_20007257",
"label": "[Mi19](FBbt_20007257)",
"tags": "Adult|Nervous_system|Neuron|Visual_system",
"thumbnail": "[](FBbt_20007257)"
},
{
"id": "FBbt_02000003",
"label": "[yR8](FBbt_02000003)",
"tags": "Adult|Cholinergic|Histaminergic|Nervous_system|Sensory_neuron|Visual_system",
"thumbnail": "[ aligned to JRC2018U')](FBbt_02000003)"
}
]
},
"output_format": "table",
"count": 253
},
{
"query": "NeuronsPostsynapticHere",
"label": "Neurons with postsynaptic terminals in medulla",
"function": "get_neurons_with_postsynaptic_terminals_in",
"takes": {
"short_form": {
"$and": [
"Class",
"Anatomy"
]
},
"default": {
"short_form": "FBbt_00003748"
}
},
"preview": 5,
"preview_columns": [
"id",
"label",
"tags",
"thumbnail"
],
"preview_results": {
"headers": {
"id": {
"title": "Add",
"type": "selection_id",
"order": -1
},
"label": {
"title": "Name",
"type": "markdown",
"order": 0,
"sort": {
"0": "Asc"
}
},
"tags": {
"title": "Tags",
"type": "tags",
"order": 2
},
"thumbnail": {
"title": "Thumbnail",
"type": "markdown",
"order": 9
}
},
"rows": [
{
"id": "FBbt_20007253",
"label": "[CB3838](FBbt_20007253)",
"tags": "Adult|GABAergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20007253)"
},
{
"id": "FBbt_20007256",
"label": "[Cm31a](FBbt_20007256)",
"tags": "Adult|GABAergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20007256)"
},
{
"id": "FBbt_20007259",
"label": "[Cm32](FBbt_20007259)",
"tags": "Adult|GABAergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20007259)"
},
{
"id": "FBbt_20007258",
"label": "[Cm35](FBbt_20007258)",
"tags": "Adult|GABAergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20007258)"
},
{
"id": "FBbt_20007257",
"label": "[Mi19](FBbt_20007257)",
"tags": "Adult|Nervous_system|Neuron|Visual_system",
"thumbnail": "[](FBbt_20007257)"
}
]
},
"output_format": "table",
"count": 331
},
{
"query": "PartsOf",
"label": "Parts of medulla",
"function": "get_parts_of",
"takes": {
"short_form": {
"$and": [
"Class"
]
},
"default": {
"short_form": "FBbt_00003748"
}
},
"preview": 5,
"preview_columns": [
"id",
"label",
"tags",
"thumbnail"
],
"preview_results": {
"headers": {
"id": {
"title": "Add",
"type": "selection_id",
"order": -1
},
"label": {
"title": "Name",
"type": "markdown",
"order": 0,
"sort": {
"0": "Asc"
}
},
"tags": {
"title": "Tags",
"type": "tags",
"order": 2
},
"thumbnail": {
"title": "Thumbnail",
"type": "markdown",
"order": 9
}
},
"rows": [
{
"id": "FBbt_00003750",
"label": "[medulla layer M1](FBbt_00003750)",
"tags": "Adult|Nervous_system|Synaptic_neuropil_subdomain|Visual_system",
"thumbnail": ""
},
{
"id": "FBbt_00003753",
"label": "[medulla layer M4](FBbt_00003753)",
"tags": "Adult|Nervous_system|Synaptic_neuropil_subdomain|Visual_system",
"thumbnail": ""
},
{
"id": "FBbt_00003754",
"label": "[medulla layer M5](FBbt_00003754)",
"tags": "Adult|Nervous_system|Synaptic_neuropil_subdomain|Visual_system",
"thumbnail": ""
},
{
"id": "FBbt_00003758",
"label": "[medulla layer M8](FBbt_00003758)",
"tags": "Adult|Nervous_system|Synaptic_neuropil_subdomain|Visual_system",
"thumbnail": ""
},
{
"id": "FBbt_00003759",
"label": "[medulla layer M9](FBbt_00003759)",
"tags": "Adult|Nervous_system|Synaptic_neuropil_subdomain|Visual_system",
"thumbnail": ""
}
]
},
"output_format": "table",
"count": 28
},
{
"query": "SubclassesOf",
"label": "Subclasses of medulla",
"function": "get_subclasses_of",
"takes": {
"short_form": {
"$and": [
"Class"
]
},
"default": {
"short_form": "FBbt_00003748"
}
},
"preview": 5,
"preview_columns": [
"id",
"label",
"tags",
"thumbnail"
],
"preview_results": {
"headers": {
"id": {
"title": "Add",
"type": "selection_id",
"order": -1
},
"label": {
"title": "Name",
"type": "markdown",
"order": 0,
"sort": {
"0": "Asc"
}
},
"tags": {
"title": "Tags",
"type": "tags",
"order": 2
},
"thumbnail": {
"title": "Thumbnail",
"type": "markdown",
"order": 9
}
}
},
"output_format": "table",
"count": 0
},
{
"query": "TractsNervesInnervatingHere",
"label": "Tracts/nerves innervating medulla",
"function": "get_tracts_nerves_innervating_here",
"takes": {
"short_form": {
"$or": [
{
"$and": [
"Class",
"Synaptic_neuropil"
]
},
{
"$and": [
"Class",
"Synaptic_neuropil_domain"
]
}
]
},
"default": {
"short_form": "FBbt_00003748"
}
},
"preview": 5,
"preview_columns": [
"id",
"label",
"tags",
"thumbnail"
],
"preview_results": {
"headers": {
"id": {
"title": "Add",
"type": "selection_id",
"order": -1
},
"label": {
"title": "Name",
"type": "markdown",
"order": 0,
"sort": {
"0": "Asc"
}
},
"tags": {
"title": "Tags",
"type": "tags",
"order": 2
},
"thumbnail": {
"title": "Thumbnail",
"type": "markdown",
"order": 9
}
},
"rows": [
{
"id": "FBbt_00005810",
"label": "[first optic chiasma](FBbt_00005810)",
"tags": "Adult|Nervous_system|Neuron_projection_bundle|Visual_system",
"thumbnail": ""
},
{
"id": "FBbt_00007427",
"label": "[posterior optic commissure](FBbt_00007427)",
"tags": "Adult|Nervous_system|Neuron_projection_bundle",
"thumbnail": "[](FBbt_00007427)"
},
{
"id": "FBbt_00003922",
"label": "[second optic chiasma](FBbt_00003922)",
"tags": "Adult|Nervous_system|Neuron_projection_bundle|Visual_system",
"thumbnail": ""