Singularity image location and WES compatibility

[smoledo]

Hi,

I have two quick questions regarding PTATO:

1. Where should the Singularity image file (ptato_1.2.0.sif) be located? Should it be placed outside the cloned PTATO directory, or inside it? The tutorial shows how to call it, but doesn’t specify a preferred location.

2. Although PTATO is optimized for WGS data, could it also be applied to WES data (for example, exome sequencing from single cells), and if so, are there specific limitations or parameters to adjust?

Thank you for your help and for maintaining this great tool!

Best regards,

Sarai Moledo.