Description of the issue:
The source code for running loopless fba and find energy generating cycles from Elad Noor (https://gitlab.com/elad.noor/stFBA) is present in the branch fix/check_infeasible_loops.
It would be nice to have this implemented as one of the tests in memote. Before we implement this we should make sure this is not on the roadmap for the memote development.
If we use the source code from Elad Noor we should consider how we do this in the most clean / appropriate way without getting too many dependent python packages.
Expected feature/value/output:
Automatic test of energy generating cycles in the memote-report
Current feature/value/output:
Can be run with the script
ComplementaryScripts/find_internal_and_unrealistic_energy-generating_cycles_scoGEM.py
Currently no energy generating cycles in the model.
To do:
I hereby confirm that:
Description of the issue:
The source code for running loopless fba and find energy generating cycles from Elad Noor (https://gitlab.com/elad.noor/stFBA) is present in the branch fix/check_infeasible_loops.
It would be nice to have this implemented as one of the tests in memote. Before we implement this we should make sure this is not on the roadmap for the memote development.
If we use the source code from Elad Noor we should consider how we do this in the most clean / appropriate way without getting too many dependent python packages.
Expected feature/value/output:
Automatic test of energy generating cycles in the memote-report
Current feature/value/output:
Can be run with the script
ComplementaryScripts/find_internal_and_unrealistic_energy-generating_cycles_scoGEM.pyCurrently no energy generating cycles in the model.
To do:
I hereby confirm that: