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1D container bugs #15

@luke-kiernan

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@luke-kiernan

For uniform interface reasons, we should avoid one dimensional containers, so that we can safely index as x[i, j]. Look into the codebase to make sure anywhere we're creating containers, they're 2 dimensional: a matrix of size (n, 1), not a vector.

edit: the bug that inspired this issue is PSI issue #76

edit^2: PR on similar issue, PSI #1518

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