consurfrc.default

[consurf]
# consurf_utildir=path to package utilities, default: __pkgdatadir__
consurf_utildir=__pkgdatadir__
# set to 1 to supress runtime output
quiet=0

[databases]
# path to PDB divided. see ftp://ftp.wwpdb.org/pub/pdb/data/structures/divided
PDB_DIVIDED =
# path to Swiss-Prot database. see http://www.uniprot.org/downloads
SWISSPROT_DB=
# path to UniRef90 database. see ftp://ftp.uniprot.org/pub/databases/uniprot/uniref/uniref90/README
UNIPROT_DB=
RCSB_WGET=wget ftp://ftp.wwpdb.org/pub/pdb/data/structures/all/pdb/

[params]
BLAST_MAX_HOMOLOGUES_TO_DISPLAY=500
MAXIMUM_MODIFIED_PERCENT=0.15
FRAGMENT_REDUNDANCY_RATE=95
FRAGMENT_OVERLAP=0.10
FRAGMENT_MINIMUM_LENGTH=0.60
MINIMUM_FRAGMENTS_FOR_MSA=5
LOW_NUM_FRAGMENTS_FOR_MSA=10
BAYES_INTERVAL=3

[programs]
MUSCLE=muscle
CLUSTALW=clustalw2
RATE4SITE=rate4site
RATE4SITE_SLOW=rate4site_doublerep
CD_HIT=cd-hit
BLASTPGP=blastpgp