repurposing-prioritization/pyproject.toml at master · RomanoLab/repurposing-prioritization · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
[build-system]
requires = ["setuptools>=61.0", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "repurposing-prioritization"
version = "0.1.0"
description = "Agentic AI system for computing drug repurposing priority scores"
readme = "README.md"
requires-python = ">=3.9"
authors = [
    {name = "Your Name", email = "your.email@example.com"}
]
dependencies = [
    "pydantic>=2.0.0",
    "pyyaml>=6.0",
    "click>=8.0.0",
    "openai>=1.0.0",
    "anthropic>=0.18.0",
    "python-dotenv>=1.0.0",
    "requests>=2.31.0",
    "tenacity>=8.2.0",
]

[project.optional-dependencies]
dev = [
    "pytest>=7.0.0",
    "pytest-cov>=4.0.0",
    "black>=23.0.0",
    "ruff>=0.1.0",
    "mypy>=1.0.0",
]

[project.scripts]
repurposing-score = "repurposing_prioritization.cli:main"

[tool.black]
line-length = 100
target-version = ["py39", "py310", "py311"]

[tool.ruff]
line-length = 100
target-version = "py39"

[tool.mypy]
python_version = "3.9"
warn_return_any = true
warn_unused_configs = true
disallow_untyped_defs = true

[tool.pytest.ini_options]
testpaths = ["tests"]
python_files = ["test_*.py"]
python_classes = ["Test*"]
python_functions = ["test_*"]