diff --git a/WORKFLOW.md b/WORKFLOW.md index 9512bdb..a0f966f 100644 --- a/WORKFLOW.md +++ b/WORKFLOW.md @@ -34,6 +34,7 @@ for i in \ oci/oci_project_and_format \ oci/oci_data_visualization \ oci/oci_ocssw_processing_overview \ + harp2/harp2_basic_visualizations \ harp2/harp2_l2_aerosol_product \ spexone/spexone_basic_visualizations \ spexone/spexone_l2_aerosol_product \ @@ -42,8 +43,6 @@ for i in \ done ``` -## Preview - ```bash conda env create -n book -f conda/conda-linux-64.lock.yml ``` @@ -52,6 +51,9 @@ conda env create -n book -f conda/conda-linux-64.lock.yml conda run --live-stream -n book ./scripts/build_resources.sh ``` +## Preview + + Run the next cell to preview the website. Interrupt the kernel (press ◾️ in the toolbar) to stop the server. diff --git a/book/_config.yml b/book/_config.yml index 3869459..f8dff69 100644 --- a/book/_config.yml +++ b/book/_config.yml @@ -33,6 +33,7 @@ parse: http: null mailto: null nb: /pace-2025/_sources/presentations/notebooks/{{path}} + myst_links_external_new_tab: true execute: execute_notebooks: off latex: diff --git a/book/presentations/notebooks.md b/book/presentations/notebooks.md index 6327a24..3dc6944 100644 --- a/book/presentations/notebooks.md +++ b/book/presentations/notebooks.md @@ -17,22 +17,22 @@ You can find additional resources that will help you analyze PACE data on the [O | :---- | :----: | :------: | :-------: | | [**Earthaccess & Earthdata Cloud**][eec-n] | [{{ l1 }}][eec-l] | [{{ d1 }}][eec-d] | {{ v0 }} | | [**Visualizing Satellite Data**][vsd-n] | [{{ d1 }}][vsd-l] | [{{ d1 }}][vsd-d] | {{ v0 }} | -| **Collaborative Coding, for Science!** | {{ l0 }} | {{ d0 }} | {{ v0 }} | -| *Matchups of in-situ Data With Satellite Data* | {{ l0 }} | {{ d0 }} | {{ v0 }} | -| [*Periodogram Analysis of Ocean Color Data*][lsp-n] | {{ l0 }} | {{ d0 }} | {{ v0 }} | -| [**OCSSW Processing Tools**][opt-n] | | {{ d0 }} | {{ v0 }} | +| **Collaborative Coding, for Science!** | [{{ l1 }}][ccs-l] | [{{ d1 }}][ccs-d] | {{ v0 }} | +| [*Matchups of in-situ Data With Satellite Data*][mup-n] | {{ l0 }} | [{{ d1 }}][mup-d] | {{ v0 }} | +| [*Periodogram Analysis of Ocean Color Data*][lsp-n] | | [{{ d1 }}][lsp-d] | {{ v0 }} | +| [**OCSSW Processing Tools**][opt-n] | | [{{ d1 }}][opt-d] | {{ v0 }} | | **Orientation to Level-2 Generator** | | {{ d0 }} | {{ v0 }} | -| *Rayleigh Correction for PACE by Machine Learning* | {{ l0 }} | {{ d0 }} | {{ v0 }} | +| *Rayleigh Correction for PACE by Machine Learning* | [{{ l1 }}][mlr-l] | {{ d0 }} | {{ v0 }} | | **Distributed Processing** | | {{ d0 }} | {{ v0 }} | -| *HARP2 at Level-1C* | | {{ d0 }} | {{ v0 }} | -| [*SPEXone at Level-1C*][s1c-n] | | {{ d0 }} | {{ v0 }} | -| [*HARP2 Aerosols at Level-2*][ha2-n] | | {{ d0 }} | {{ v0 }} | -| [*SPEXone Aerosols at Level-2*][sa2-n] | | {{ d0 }} | {{ v0 }} | +| [*HARP2 at Level-1C*][h1c-n] | | [{{ d1 }}][h1c-d] | {{ v0 }} | +| [*SPEXone at Level-1C*][s1c-n] | | [{{ d1 }}][s1c-d] | {{ v0 }} | +| [*HARP2 Aerosols at Level-2*][ha2-n] | | [{{ d1 }}][ha2-d] | {{ v0 }} | +| [*SPEXone Aerosols at Level-2*][sa2-n] | | [{{ d1 }}][sa2-d] | {{ v0 }} | | *Environments for Reusable Projects* | {{ l0 }} | | {{ v0 }} | -| Machine Learning Cloud Mask | | {{ d0 }} | | -| [OCI Land Products][olp-n] | | {{ d0 }} | | -| [Projection and GeoTIFFs from Level-2][rio-n] | | {{ d0 }} | [{{ v1 }}][rio-v] | -| [OCI NO2 Product Preview][no2-n] | | {{ d0 }} | | +| [Machine Learning Cloud Mask][mlc-n] | | [{{ d1 }}][mlc-d] | | +| [OCI Land Products][olp-n] | | [{{ d1 }}][olp-d] | | +| [Projection and GeoTIFFs from Level-2][rio-n] | | [{{ d1 }}][rio-d] | [{{ v1 }}][rio-v] | +| [OCI NO2 Product Preview][no2-n] | | [{{ d1 }}][no2-d] | | | Phytoplankton Pigments (GPig) Preview | | {{ d0 }} | | | Running GIOP wtih OCSSW | | {{ d0 }} | | @@ -45,19 +45,48 @@ You can find additional resources that will help you analyze PACE data on the [O (???) github.com:ryan-edward-oshea/MDN_tutorials --> [eec-n]: notebooks/earthdata_cloud_access -[eec-l]: https://docs.google.com/presentation/d/1DmdHELzkqIwIB3mC7AbHSKUJHt7CSHNgV5X1aDeCppw/present?slide=id.p1 +[eec-l]: https://docs.google.com/presentation/d/1DmdHELzkqIwIB3mC7AbHSKUJHt7CSHNgV5X1aDeCppw/present [eec-d]: nb:earthdata_cloud_access.ipynb [vsd-n]: notebooks/oci_data_visualization [vsd-l]: https://drive.usercontent.google.com/download?id=1lv10jP-jKJUh4JCxpse0oZyErMJurMYZ&export=download&authuser=0 [vsd-d]: nb:oci_data_visualization.ipynb +[ccs-l]: https://docs.google.com/presentation/d/1e5W_1MJsYemscRiRemVsGmc9KhAMD3supzhzDAarxLI/present +[ccs-d]: nb:blue-marble.ipynb + +[mup-n]: notebooks/satellite_insitu_matchups +[mup-d]: nb:satellite_insitu_matchups.ipynb + [lsp-n]: notebooks/modis_lombscargle_periodogram +[lsp-d]: nb:modis_lombscargle_periodogram.ipynb + [opt-n]: notebooks/oci_ocssw_processing_overview -[olp-n]: notebooks/oci_terrestrial_data +[opt-d]: nb:oci_ocssw_processing_overview.ipynb + +[mlr-l]: https://docs.google.com/presentation/d/1wUHsZke7bQ1oW5nAaZKVTqNI8H5sP_Ar/present + +[h1c-n]: notebooks/harp2_basic_visualizations +[h1c-d]: nb:harp2_basic_visualizations.ipynb + [s1c-n]: notebooks/spexone_basic_visualizations +[s1c-d]: nb:spexone_basic_visualizations.ipynb + [ha2-n]: notebooks/harp2_l2_aerosol_product +[ha2-d]: nb:harp2_l2_aerosol_product.ipynb + [sa2-n]: notebooks/spexone_l2_aerosol_product +[sa2-d]: nb:spexone_l2_aerosol_product.ipynb + +[mlc-n]: notebooks/ml_cloud_mask +[mlc-d]: nb:ml_cloud_mask.ipynb + +[olp-n]: notebooks/oci_terrestrial_data +[olp-d]: nb:oci_terrestrial_data.ipynb + [rio-n]: notebooks/oci_project_and_format -[no2-n]: notebooks/oci_no2 +[rio-d]: nb:oci_project_and_format.ipynb [rio-v]: https://www.youtube.com/watch?v=hOu8rPd_x6I&t=970s + +[no2-n]: notebooks/oci_no2 +[no2-d]: nb:oci_no2.ipynb diff --git a/book/presentations/notebooks/blue-marble.ipynb b/book/presentations/notebooks/blue-marble.ipynb new file mode 100644 index 0000000..0d17b8c --- /dev/null +++ b/book/presentations/notebooks/blue-marble.ipynb @@ -0,0 +1,1886 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": 1, + "id": "cf1c9d0f", + "metadata": {}, + "outputs": [], + "source": [ + "import fsspec" + ] + }, + { + "cell_type": "code", + "execution_count": 2, + "id": "390c4d76", + "metadata": {}, + "outputs": [], + "source": [ + "fsspec.config.conf[\"s3\"] = {\n", + "\"default_cache_type\": \"blockcache\",\n", + "\"default_block_size\": 2**22\n", + "}" + ] + }, + { + "cell_type": "code", + "execution_count": 3, + "id": "ad340105", + "metadata": {}, + "outputs": [], + "source": [ + "import earthaccess\n", + "import xarray as xr" + ] + }, + { + "cell_type": "code", + "execution_count": 4, + "id": "671c6014", + "metadata": {}, + "outputs": [], + "source": [ + "tspan = (\"2024-08\", '2024-08')\n", + "results = earthaccess.search_data(short_name=\"PACE_OCI_L3M_SFREFL\", granule_name=\"*.MO.*.0p1deg.*\", temporal=tspan)" + ] + }, + { + "cell_type": "code", + "execution_count": 5, + "id": "dac86928", + "metadata": {}, + "outputs": [ + { + "data": { + "application/vnd.jupyter.widget-view+json": { + "model_id": "2a739f3de42f4f89b5fd88fe1e74b9b9", + "version_major": 2, + "version_minor": 0 + }, + "text/plain": [ + "QUEUEING TASKS | : 0%| | 0/1 [00:00, ?it/s]" + ] + }, + "metadata": {}, + "output_type": "display_data" + }, + { + "data": { + "application/vnd.jupyter.widget-view+json": { + "model_id": "2731a1c28b98451a9b852c65a9c87296", + "version_major": 2, + "version_minor": 0 + }, + "text/plain": [ + "PROCESSING TASKS | : 0%| | 0/1 [00:00, ?it/s]" + ] + }, + "metadata": {}, + "output_type": "display_data" + }, + { + "data": { + "application/vnd.jupyter.widget-view+json": { + "model_id": "10016ba3aca8456c9a48180521874c66", + "version_major": 2, + "version_minor": 0 + }, + "text/plain": [ + "COLLECTING RESULTS | : 0%| | 0/1 [00:00, ?it/s]" + ] + }, + "metadata": {}, + "output_type": "display_data" + } + ], + "source": [ + "paths = earthaccess.open(results)" + ] + }, + { + "cell_type": "code", + "execution_count": 6, + "id": "b8f58b7a", + "metadata": {}, + "outputs": [], + "source": [ + "dataset = xr.open_dataset(paths[0])" + ] + }, + { + "cell_type": "code", + "execution_count": 7, + "id": "4edda2a6", + "metadata": {}, + "outputs": [ + { + "data": { + "text/html": [ + "
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| 0 | \n", + "AAOT | \n", + "2024-03-23 12:33:17+00:00 | \n", + "45.3139 | \n", + "12.5083 | \n", + "47.302649 | \n", + "0.004307 | \n", + "0.004058 | \n", + "0.004141 | \n", + "0.005901 | \n", + "0.006806 | \n", + "... | \n", + "-136.982872 | \n", + "144.597544 | \n", + "-114.832692 | \n", + "57.839393 | \n", + "-157.844290 | \n", + "46.120953 | \n", + "0.814253 | \n", + "4.849302 | \n", + "18.0 | \n", + "0.078889 | \n", + "
| 1 | \n", + "AAOT | \n", + "2024-03-23 12:33:17+00:00 | \n", + "45.3139 | \n", + "12.5083 | \n", + "47.302649 | \n", + "0.004307 | \n", + "0.004058 | \n", + "0.004141 | \n", + "0.005901 | \n", + "0.006806 | \n", + "... | \n", + "-136.982872 | \n", + "144.597544 | \n", + "-114.832692 | \n", + "57.839393 | \n", + "-157.844290 | \n", + "46.120953 | \n", + "0.814253 | \n", + "4.849302 | \n", + "18.0 | \n", + "0.078889 | \n", + "
| 2 | \n", + "AAOT | \n", + "2024-04-12 10:54:16+00:00 | \n", + "45.3139 | \n", + "12.5083 | \n", + "36.472420 | \n", + "0.004048 | \n", + "0.003921 | \n", + "0.004118 | \n", + "0.005379 | \n", + "0.005886 | \n", + "... | \n", + "93.466575 | \n", + "117.891866 | \n", + "86.030685 | \n", + "56.997382 | \n", + "172.539090 | \n", + "36.540468 | \n", + "0.750300 | \n", + "2.571879 | \n", + "14.0 | \n", + "0.064686 | \n", + "
| 3 | \n", + "AAOT | \n", + "2024-04-12 10:54:16+00:00 | \n", + "45.3139 | \n", + "12.5083 | \n", + "36.472420 | \n", + "0.004048 | \n", + "0.003921 | \n", + "0.004118 | \n", + "0.005379 | \n", + "0.005886 | \n", + "... | \n", + "93.466575 | \n", + "117.891866 | \n", + "86.030685 | \n", + "56.997382 | \n", + "172.539090 | \n", + "36.540468 | \n", + "0.750300 | \n", + "2.571879 | \n", + "14.0 | \n", + "0.064686 | \n", + "
| 4 | \n", + "AAOT | \n", + "2024-04-25 11:51:34+00:00 | \n", + "45.3139 | \n", + "12.5083 | \n", + "33.338863 | \n", + "0.003782 | \n", + "0.003844 | \n", + "0.004123 | \n", + "0.005607 | \n", + "0.005915 | \n", + "... | \n", + "-160.310954 | \n", + "169.168450 | \n", + "-140.368998 | \n", + "33.718012 | \n", + "-160.020311 | \n", + "33.228130 | \n", + "0.271149 | \n", + "2.796307 | \n", + "20.0 | \n", + "0.048518 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "
| 120 | \n", + "AAOT | \n", + "2025-05-13 10:40:44+00:00 | \n", + "45.3139 | \n", + "12.5083 | \n", + "27.226601 | \n", + "0.004654 | \n", + "0.004372 | \n", + "0.004522 | \n", + "0.005522 | \n", + "0.005617 | \n", + "... | \n", + "92.799054 | \n", + "121.181726 | \n", + "86.787322 | \n", + "55.942566 | \n", + "173.989459 | \n", + "26.892259 | \n", + "1.236634 | \n", + "3.076278 | \n", + "14.0 | \n", + "0.066466 | \n", + "
| 121 | \n", + "AAOT | \n", + "2025-05-16 10:40:47+00:00 | \n", + "45.3139 | \n", + "12.5083 | \n", + "26.526608 | \n", + "0.003335 | \n", + "0.003081 | \n", + "0.003378 | \n", + "0.004783 | \n", + "0.005144 | \n", + "... | \n", + "93.412952 | \n", + "126.235420 | \n", + "91.306392 | \n", + "50.522191 | \n", + "177.890302 | \n", + "26.109041 | \n", + "0.448721 | \n", + "3.195772 | \n", + "21.0 | \n", + "0.061710 | \n", + "
| 122 | \n", + "AAOT | \n", + "2025-05-16 12:40:44+00:00 | \n", + "45.3139 | \n", + "12.5083 | \n", + "32.890453 | \n", + "0.002938 | \n", + "0.002967 | \n", + "0.003365 | \n", + "0.004687 | \n", + "0.005203 | \n", + "... | \n", + "-151.396433 | \n", + "138.152552 | \n", + "-107.091747 | \n", + "68.776835 | \n", + "-135.694682 | \n", + "32.489638 | \n", + "0.499936 | \n", + "1.842072 | \n", + "14.0 | \n", + "0.103037 | \n", + "
| 123 | \n", + "AAOT | \n", + "2025-05-18 12:16:35+00:00 | \n", + "45.3139 | \n", + "12.5083 | \n", + "29.713954 | \n", + "0.004543 | \n", + "0.004572 | \n", + "0.005183 | \n", + "0.006997 | \n", + "0.007613 | \n", + "... | \n", + "-152.590822 | \n", + "151.347055 | \n", + "-119.283216 | \n", + "52.021575 | \n", + "-146.693066 | \n", + "29.010292 | \n", + "0.723115 | \n", + "3.921633 | \n", + "18.0 | \n", + "0.061585 | \n", + "
| 124 | \n", + "AAOT | \n", + "2025-05-18 12:16:35+00:00 | \n", + "45.3139 | \n", + "12.5083 | \n", + "29.713954 | \n", + "0.004543 | \n", + "0.004572 | \n", + "0.005183 | \n", + "0.006997 | \n", + "0.007613 | \n", + "... | \n", + "-152.590822 | \n", + "151.347055 | \n", + "-119.283216 | \n", + "52.021575 | \n", + "-146.693066 | \n", + "29.010292 | \n", + "0.723115 | \n", + "3.921633 | \n", + "18.0 | \n", + "0.061585 | \n", + "
125 rows × 239 columns
\n", + "| \n", + " | Number_of_Points | \n", + "Scale_Independence | \n", + "Mean_Bias | \n", + "Limits_of_Agreement_low | \n", + "Limits_of_Agreement_high | \n", + "Linear_Slope | \n", + "Linear_Intercept | \n", + "Linear_Correlation | \n", + "Rank_Correlation | \n", + "RMSE | \n", + "MAE | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|
| wavelength | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 400 | \n", + "125 | \n", + "False | \n", + "-0.000300 | \n", + "-999.000000 | \n", + "-999.000000 | \n", + "2.956804 | \n", + "-0.008415 | \n", + "0.487775 | \n", + "0.444074 | \n", + "0.002110 | \n", + "0.001464 | \n", + "
| 412 | \n", + "125 | \n", + "False | \n", + "-0.000425 | \n", + "-999.000000 | \n", + "-999.000000 | \n", + "2.287432 | \n", + "-0.005664 | \n", + "0.570860 | \n", + "0.505286 | \n", + "0.001899 | \n", + "0.001367 | \n", + "
| 443 | \n", + "125 | \n", + "False | \n", + "-0.000402 | \n", + "-999.000000 | \n", + "-999.000000 | \n", + "1.306857 | \n", + "-0.001797 | \n", + "0.745781 | \n", + "0.683043 | \n", + "0.001538 | \n", + "0.001110 | \n", + "
| 490 | \n", + "125 | \n", + "True | \n", + "-0.000580 | \n", + "-0.002036 | \n", + "0.000875 | \n", + "1.019119 | \n", + "-0.000694 | \n", + "0.822888 | \n", + "0.782134 | \n", + "0.001567 | \n", + "0.001115 | \n", + "
| 510 | \n", + "125 | \n", + "True | \n", + "-0.000577 | \n", + "-0.002049 | \n", + "0.000895 | \n", + "0.969750 | \n", + "-0.000397 | \n", + "0.833651 | \n", + "0.751986 | \n", + "0.001581 | \n", + "0.001088 | \n", + "
| 560 | \n", + "125 | \n", + "True | \n", + "-0.000453 | \n", + "-0.001963 | \n", + "0.001058 | \n", + "0.936413 | \n", + "-0.000085 | \n", + "0.885275 | \n", + "0.817789 | \n", + "0.001577 | \n", + "0.001002 | \n", + "
| 620 | \n", + "125 | \n", + "True | \n", + "-0.000354 | \n", + "-0.001079 | \n", + "0.000371 | \n", + "0.972459 | \n", + "-0.000309 | \n", + "0.861533 | \n", + "0.727380 | \n", + "0.000807 | \n", + "0.000553 | \n", + "
| 667 | \n", + "125 | \n", + "False | \n", + "-0.000359 | \n", + "-999.000000 | \n", + "-999.000000 | \n", + "1.032490 | \n", + "-0.000394 | \n", + "0.837760 | \n", + "0.671840 | \n", + "0.000632 | \n", + "0.000474 | \n", + "