New Providers #21
Description
- GWAS Central: http://help.gwascentral.org/info/web-services/search/ (GWAS)
- E Mouse: http://www.emouseatlas.org/emage/home.php (Transcriptomics)
- Intact: Protein -(Protein Interactions.)
- BioModel. (BioModels/System Biology)
- Brain Map Project http://brain-map.org/ (Transcriptomics)
Pathways:
- Reactome
- Wikipathways (http://www.wikipathways.org/index.php/Help:WikiPathways_Webservice/API), API http://webservice.wikipathways.org/listPathways
- KEEG (http://www.kegg.jp/kegg/rest/keggapi.html)
Proteomics:
- Yed Med Database: https://yped.med.yale.edu:8443/repository/
- ProteomeForms : http://repository.topdownproteomics.org/proteoforms/?DataSetId=1
- ProteomicsDB : https://www.proteomicsdb.org/
- PaxDB.
- Chorus
Genomics:
- dbGap : https://www.ncbi.nlm.nih.gov/gap
- SRA : https://www.ncbi.nlm.nih.gov/sra
- Epigenomics: http://www.roadmapepigenomics.org/
- Rat Genome Database: http://rgd.mcw.edu/
- https://gdc-portal.nci.nih.gov/projects/
- GEO http://www.ncbi.nlm.nih.gov/sites/GDSbrowser?acc=GDS4356
- ClinVar : https://www.ncbi.nlm.nih.gov/clinvar/
Structures:
- Biological Magnetic Resonance Data Bank http://www.bmrb.wisc.edu/
- PDB : www.rcsb.org/pdb/
Transcriptomics:
Other Databases
- SILVA: https://www.arb-silva.de/
- BRENDA: www.brenda-enzymes.org
- HPA : http://www.proteinatlas.org
- EGA: https://www.ebi.ac.uk/ega/home
- UniProt: http://www.uniprot.org/
- STRING-db: http://string-db.org/
- MINT: http://mint.bio.uniroma2.it/mint
- ArrayExpress: https://www.ebi.ac.uk/arrayexpress/
- BioModels: https://www.ebi.ac.uk/biomodels-main/
- ChEBI: https://www.ebi.ac.uk/chebi/
- ChEMBL: https://www.ebi.ac.uk/chembl/
- ENA: http://www.ebi.ac.uk/ena
- Ensembl: http://www.ensembl.org/index.html
- Ensembl Genomes: http://ensemblgenomes.org/
- IntAct: http://www.ebi.ac.uk/intact/
- InterPro: https://www.ebi.ac.uk/interpro/
- MetaboLights: http://www.ebi.ac.uk/metabolights/
- PDBe: https://www.ebi.ac.uk/pdbe/
- Pfam: http://pfam.xfam.org/
- PRIDE: https://www.ebi.ac.uk/pride/archive/
- The Expression Atlas: https://www.ebi.ac.uk/gxa/home
- CATH-Gene3D: http://www.cathdb.info/
- IUPHAR/BPS: http://www.guidetopharmacology.org/
- Pathogen-Host Interaction Database: http://www.phi-base.org/
- Biomedical Atlas Centre: http://www.elixir-uk.org/expression-atlases
- ORCAE: http://bioinformatics.psb.ugent.be/orcae/
- PLAZA: http://bioinformatics.psb.ugent.be/plaza/
- NGS-Logistics: https://ngsl.esat.kuleuven.be
- BBMRI.fi: http://www.bbmri.fi
- IS Finder: https://www-is.biotoul.fr
- CRISPRdb: http://crispr.u-psud.fr/crispr/
- MetExplore: http://www.metexplore.fr
- GiantVirus: http://www.giantvirus.org
- RNAspace: http://www.rnaspace.org
- GnpIS: http://urgi.versailles.inra.fr/gnpis
- Orphanet: http://www.orpha.net
- RaDICO: http://www.radico.fr/fr/
- ACSN: https://acsn.curie.fr
- IMGT: http://www.imgt.org
- HOVERGEN: http://pbil.univ-lyon1.fr/databases/hovergen.php
- HOGENOM: http://doua.prabi.fr/databases/hogenom/home.php?contents=query
- HOMOLENS: http://pbil.univ-lyon1.fr/databases/homolens.php
- ProDom
- CAZy
- MINT
- ASPicDB
- DIGIT
- MobiDB
- LiceBase
- CoarkOakDB
- TreePortal
- GOMapMan: http://www.gomapman.org
- BASE: http://base.thep.lu.se
- FireDB
- MoDEL
- CellBase
- CentrosomeDB
- ABS
- HCAD
- HPA
- Bgee
- EPD
- GlycoSuiteDB
- SugarBind
- Progenetix
- Arraymap
- OrthoDB
- ImmunoDB
- miROrtho
- http://bigg.ucsd.edu/advanced_search
- PROSITE
- Reactome: www.reactome.org
- Enzyme Portal: www.ebi.ac.uk/enzymeportal
- IntEnz: www.ebi.ac.uk/intenz
- GeneCards
- ProtoNet
- CATH/Gene3D: http://www.cathdb.info/
- Biomedical Atlas Centre: emouseatlas.org, hudsen.org, echickatlas.org
- IUPHAR/BPS Guide to Pharmacology: www.guidetopharmacology.org
- PHI Base: http://www.phi-base.org