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8484For both *PolyBuild * and *PolyTop *, monomer parameters should include all monomer atoms that will be present
8585in the simulation model of the final polymer, and dummy atoms correesponding to connectivity with adjacent monomers.
8686The method for preparing monomer .itp depends on the choice of force field, and a number of suitable automated tools
87- exist for small molecule parameterization such as the `Automated Topology Builder <https://atb.uq.edu.au>_ ` ,
88- `antechamber <https://ambermd.org/antechamber/ac.html>_ ` , and `LigParGen https://zarbi.chem.yale.edu/ligpargen/_ ` .
87+ exist for small molecule parameterization such as the `Automated Topology Builder <https://atb.uq.edu.au >`_ ,
88+ `antechamber <https://ambermd.org/antechamber/ac.html >`_ , and `LigParGen < https://zarbi.chem.yale.edu/ligpargen/ >`_ .
8989
9090Monomer coordinates and parameters used as inputs should be designed to reflect the state of the monomer
9191in the mature polymer chain, rather than the isolated monomer molecule prior to polymerization. For example,
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