neurodevco-practices/_quarto.yml at main · NeuroDevCo/neurodevco-practices · GitHub

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project:
  type: book

book:
  title: "Good programming practices"
  subtitle: NeuroDevelopment and Comparative Cognition research group
  author:
    - name: Gonzalo García-Castro
      orcid: 0000-0002-8553-4209
      email: gonzalo.garcia@sjd.es
      affiliations:
        - name: Institut de Recerca Sant Joan de Déu
          address: Edifici SJD Pediatric Cancer Center. Santa Rosa, 39-57
          city:  Esplugues del Llobregat
          state: Barcelona
          postal-code: 08950
          corresponding: true
  date: last-modified
  date-format: short
  page-navigation: true
  search: true
  repo-url: https://github.com/NeuroDevCo/repro-book/
  repo-actions: [edit]
  downloads: [pdf, epub]
  sharing: [twitter, linkedin]
  chapters:
    - index.qmd
    - files.qmd
    - data.qmd
    - documentation.qmd
    - transparency.qmd
    - part: coding.qmd
      chapters:
        - ide.qmd
        - venv.qmd
        - style.qmd
        - paths.qmd
        - probabilistic.qmd
    - visualization.qmd
    - reporting.qmd
    - packages.qmd
    - testing.qmd
    - docker.qmd
  appendices:
    - resources.qmd
    - references.qmd
  sidebar:
    style: floating
    background: white
    border: false
    pinned: true
  page-footer:
    left: "Copyright 2025, Gonzalo García-Castro"
    right:
      - icon: github
        href: https://github.com/gongcastro
      - icon: twitter
        href: https://twitter.com/gongcastro
      - icon: bluesky
        href: https://bsky.app/profile/gongcastro.bsky.social
  favicon: static/img/ndc-logo.png
  twitter-card: true
  site-url: https://neurodevco.github.io/neurodevco-practices
comments:
  hypothesis: true
code-copy: true
bibliography: references.bib
csl: apa.csl
execute:
  freeze: auto
lightbox: true
title-block-banner: true
title-block-banner-color: black
title-block-categories: true
title-block-style: default
keywords:
  - reproducibility
  - programming
  - scientific reporting
  - documentation
  - metadata
  - coding
  - good practices
  - transparency
  - python
  - open-source
  - r
license: CC BY
copyright:
  holder: Gonzalo García-Castro
  year: 2025
citation: true
number-depth: 2

format:
  html:
    theme:
      - brand
      - style.scss
    page-layout: full