diff --git a/data/modules/deacon/v0.9.0/illumina_paired-end_deacon-filter-deplete.json b/data/modules/deacon/v0.9.0/illumina_paired-end_deacon-filter-deplete.json new file mode 100644 index 00000000..818ab4ab --- /dev/null +++ b/data/modules/deacon/v0.9.0/illumina_paired-end_deacon-filter-deplete.json @@ -0,0 +1,28 @@ +{ + "version": "deacon 0.9.0", + "index": "panhuman-1.k31w15.idx", + "input": "input_R1.fastq.gz", + "input2": "input_R2.fastq.gz", + "output": "output_R1_nonhuman.fastq.gz", + "output2": "output_R2_nonhuman.fastq.gz", + "k": 31, + "w": 15, + "abs_threshold": 2, + "rel_threshold": 0.01, + "prefix_length": 0, + "deplete": true, + "rename": false, + "seqs_in": 4303192, + "seqs_out": 4301106, + "seqs_out_proportion": 0.9995152435680305, + "seqs_removed": 2086, + "seqs_removed_proportion": 0.0004847564319695705, + "bp_in": 624570200, + "bp_out": 624244486, + "bp_out_proportion": 0.9994784989741745, + "bp_removed": 325714, + "bp_removed_proportion": 0.0005215010258254396, + "time": 33.980847602, + "seqs_per_second": 126635, + "bp_per_second": 18380065 +} diff --git a/data/modules/deacon/v0.9.0/illumina_paired-end_deacon-filter-nodeplete.json b/data/modules/deacon/v0.9.0/illumina_paired-end_deacon-filter-nodeplete.json new file mode 100644 index 00000000..051df853 --- /dev/null +++ b/data/modules/deacon/v0.9.0/illumina_paired-end_deacon-filter-nodeplete.json @@ -0,0 +1,28 @@ +{ + "version": "deacon 0.9.0", + "index": "panhuman-1.k31w15.idx", + "input": "input_R1.fastq.gz", + "input2": "input_R2.fastq.gz", + "output": "output_R1_nonhuman.fastq.gz", + "output2": "output_R2_nonhuman.fastq.gz", + "k": 31, + "w": 15, + "abs_threshold": 2, + "rel_threshold": 0.01, + "prefix_length": 0, + "deplete": false, + "rename": false, + "seqs_in": 4303192, + "seqs_out": 2086, + "seqs_out_proportion": 0.0004847564319695705, + "seqs_removed": 4301106, + "seqs_removed_proportion": 0.9995152435680305, + "bp_in": 624570200, + "bp_out": 325714, + "bp_out_proportion": 0.0005215010258254396, + "bp_removed": 624244486, + "bp_removed_proportion": 0.9994784989741745, + "time": 9.783738302, + "seqs_per_second": 439831, + "bp_per_second": 63837582 +}