diff --git a/notebooks/run_Cellpose-SAM.ipynb b/notebooks/run_Cellpose-SAM.ipynb index 5f2232af..543d186f 100644 --- a/notebooks/run_Cellpose-SAM.ipynb +++ b/notebooks/run_Cellpose-SAM.ipynb @@ -358,8 +358,8 @@ "source": [ "for i in trange(len(files)):\n", " f = files[i]\n", - " masks0 = io.imsave(dir / (f.name + \"_masks\" + masks_ext))\n", - " io.save_rois(masks0, f)" + " io.imsave(dir / (f.name + \"_masks\" + masks_ext), masks[i])\n", + " io.save_rois(masks[i], f)" ] } ],