From e153899b52ba61c687d787fe6fd069eeb8e6d0d2 Mon Sep 17 00:00:00 2001
From: YANSIN <yansin.huang1@unimelb.edu.au>
Date: Wed, 6 Aug 2025 11:32:18 +1000
Subject: [PATCH 01/31] add github_token

---
 scripts/build-push | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/scripts/build-push b/scripts/build-push
index a018685..01444c6 100644
--- a/scripts/build-push
+++ b/scripts/build-push
@@ -21,6 +21,9 @@ docker build \
 
 dockerhub_username=$(aws ssm get-parameter --name "/services/dockerhub/massdynamics-username" --query "Parameter.Value" --output text)
 dockerhub_password=$(aws ssm get-parameter --name "/services/dockerhub/massdynamics-password" --with-decryption --query "Parameter.Value" --output text)
+github_token=$(aws ssm get-parameter --name "/services/github/key" --with-decryption --query "Parameter.Value" --output text)
+export GH_TOKEN=$github_token
+echo "GH_TOKEN: ${GH_TOKEN:0:5}*****"
 
 docker login -u $dockerhub_username -p $dockerhub_password
 

From 0135280c7e02161af6515513c79e324e39e53678 Mon Sep 17 00:00:00 2001
From: YANSIN <yansin.huang1@unimelb.edu.au>
Date: Wed, 6 Aug 2025 13:31:46 +1000
Subject: [PATCH 02/31] add github_token to test script

---
 scripts/test | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/scripts/test b/scripts/test
index 6b5dea4..52cce71 100755
--- a/scripts/test
+++ b/scripts/test
@@ -13,6 +13,9 @@ if ! (( $(conda env list | grep "^${CONDA_ENV_NAME}[[:space:]]*" >/dev/null 2>&1
 fi
 
 echo "installing packages into ${CONDA_ENV_NAME}"
+github_token=$(aws ssm get-parameter --name "/services/github/key" --with-decryption --query "Parameter.Value" --output text)
+export GH_TOKEN=$github_token
+echo "GH_TOKEN: ${GH_TOKEN:0:5}*****"
 conda run -n $CONDA_ENV_NAME bash -c "python -m pip install -e '.[dev]'"
 
 TZ=UTC conda run -n $CONDA_ENV_NAME bash -c "pytest -n auto"

From fa27a96ffb5bb3ca3c5d8f3973d30701a14cee23 Mon Sep 17 00:00:00 2001
From: YANSIN <yansin.huang1@unimelb.edu.au>
Date: Wed, 6 Aug 2025 13:35:19 +1000
Subject: [PATCH 03/31] add github_token to test script

---
 scripts/test | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/scripts/test b/scripts/test
index 52cce71..751e495 100755
--- a/scripts/test
+++ b/scripts/test
@@ -13,6 +13,8 @@ if ! (( $(conda env list | grep "^${CONDA_ENV_NAME}[[:space:]]*" >/dev/null 2>&1
 fi
 
 echo "installing packages into ${CONDA_ENV_NAME}"
+python3 -m venv venv
+source venv/bin/activate
 github_token=$(aws ssm get-parameter --name "/services/github/key" --with-decryption --query "Parameter.Value" --output text)
 export GH_TOKEN=$github_token
 echo "GH_TOKEN: ${GH_TOKEN:0:5}*****"

From 9d96ce0e877c8964bf92e1eb08cc510bab2f907c Mon Sep 17 00:00:00 2001
From: YANSIN <yansin.huang1@unimelb.edu.au>
Date: Wed, 6 Aug 2025 13:49:50 +1000
Subject: [PATCH 04/31] add aws profile

---
 .buildkite/pipeline.yml |  7 +++++++
 scripts/test            | 16 ++++++++++++++--
 2 files changed, 21 insertions(+), 2 deletions(-)

diff --git a/.buildkite/pipeline.yml b/.buildkite/pipeline.yml
index 965a9e8..2daf800 100644
--- a/.buildkite/pipeline.yml
+++ b/.buildkite/pipeline.yml
@@ -1,8 +1,13 @@
+env:
+  AWS_REGION: "ap-southeast-2"
+  AWS_DEFAULT_REGION: "ap-southeast-2"
+
 steps:
   - label: ":python: test"
     command: ./scripts/test
     env:
       CONDA_ENV_NAME: "md_dataset_package"
+      AWS_PROFILE: "eb-services-cli"
     agents:
       python-r-4.3: true
 
@@ -10,6 +15,8 @@ steps:
     command: ./scripts/lint
     env:
       CONDA_ENV_NAME: "md_dataset_package"
+      env:
+      AWS_PROFILE: "eb-services-cli"
     agents:
       python-r-4.3: true
 
diff --git a/scripts/test b/scripts/test
index 751e495..b274e04 100755
--- a/scripts/test
+++ b/scripts/test
@@ -13,8 +13,20 @@ if ! (( $(conda env list | grep "^${CONDA_ENV_NAME}[[:space:]]*" >/dev/null 2>&1
 fi
 
 echo "installing packages into ${CONDA_ENV_NAME}"
-python3 -m venv venv
-source venv/bin/activate
+
+# Install AWS CLI if not available
+if ! command -v aws &> /dev/null; then
+    echo "AWS CLI not found, installing..."
+    if command -v pip &> /dev/null; then
+        pip install awscli
+    elif command -v pip3 &> /dev/null; then
+        pip3 install awscli
+    else
+        echo "Error: pip not found, cannot install AWS CLI"
+        exit 1
+    fi
+fi
+
 github_token=$(aws ssm get-parameter --name "/services/github/key" --with-decryption --query "Parameter.Value" --output text)
 export GH_TOKEN=$github_token
 echo "GH_TOKEN: ${GH_TOKEN:0:5}*****"

From b99a2d607527956c53348f827deb0503f9daf65c Mon Sep 17 00:00:00 2001
From: YANSIN <yansin.huang1@unimelb.edu.au>
Date: Wed, 6 Aug 2025 13:50:32 +1000
Subject: [PATCH 05/31] add aws profile

---
 scripts/test | 14 --------------
 1 file changed, 14 deletions(-)

diff --git a/scripts/test b/scripts/test
index b274e04..52cce71 100755
--- a/scripts/test
+++ b/scripts/test
@@ -13,20 +13,6 @@ if ! (( $(conda env list | grep "^${CONDA_ENV_NAME}[[:space:]]*" >/dev/null 2>&1
 fi
 
 echo "installing packages into ${CONDA_ENV_NAME}"
-
-# Install AWS CLI if not available
-if ! command -v aws &> /dev/null; then
-    echo "AWS CLI not found, installing..."
-    if command -v pip &> /dev/null; then
-        pip install awscli
-    elif command -v pip3 &> /dev/null; then
-        pip3 install awscli
-    else
-        echo "Error: pip not found, cannot install AWS CLI"
-        exit 1
-    fi
-fi
-
 github_token=$(aws ssm get-parameter --name "/services/github/key" --with-decryption --query "Parameter.Value" --output text)
 export GH_TOKEN=$github_token
 echo "GH_TOKEN: ${GH_TOKEN:0:5}*****"

From b54275046c37b78f9387b8154df9db6e07a8bc63 Mon Sep 17 00:00:00 2001
From: YANSIN <yansin.huang1@unimelb.edu.au>
Date: Wed, 6 Aug 2025 13:59:37 +1000
Subject: [PATCH 06/31] modify test script

---
 scripts/test | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/scripts/test b/scripts/test
index 52cce71..751e495 100755
--- a/scripts/test
+++ b/scripts/test
@@ -13,6 +13,8 @@ if ! (( $(conda env list | grep "^${CONDA_ENV_NAME}[[:space:]]*" >/dev/null 2>&1
 fi
 
 echo "installing packages into ${CONDA_ENV_NAME}"
+python3 -m venv venv
+source venv/bin/activate
 github_token=$(aws ssm get-parameter --name "/services/github/key" --with-decryption --query "Parameter.Value" --output text)
 export GH_TOKEN=$github_token
 echo "GH_TOKEN: ${GH_TOKEN:0:5}*****"

From daf29baa94b94e1221f8780c2a3aa50ee4f5c224 Mon Sep 17 00:00:00 2001
From: YANSIN <yansin.huang1@unimelb.edu.au>
Date: Wed, 6 Aug 2025 14:18:12 +1000
Subject: [PATCH 07/31] modify test script

---
 .buildkite/pipeline.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.buildkite/pipeline.yml b/.buildkite/pipeline.yml
index 2daf800..c89efa2 100644
--- a/.buildkite/pipeline.yml
+++ b/.buildkite/pipeline.yml
@@ -8,6 +8,7 @@ steps:
     env:
       CONDA_ENV_NAME: "md_dataset_package"
       AWS_PROFILE: "eb-services-cli"
+      DOCKER_FILE: "base.Dockerfile"
     agents:
       python-r-4.3: true
 

From 0d450c1f2a95e46a74e39662f8d069e967f4356f Mon Sep 17 00:00:00 2001
From: YANSIN <yansin.huang1@unimelb.edu.au>
Date: Wed, 6 Aug 2025 14:20:11 +1000
Subject: [PATCH 08/31] modify test script

---
 .buildkite/pipeline.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.buildkite/pipeline.yml b/.buildkite/pipeline.yml
index c89efa2..ce85bfb 100644
--- a/.buildkite/pipeline.yml
+++ b/.buildkite/pipeline.yml
@@ -7,7 +7,7 @@ steps:
     command: ./scripts/test
     env:
       CONDA_ENV_NAME: "md_dataset_package"
-      AWS_PROFILE: "eb-services-cli"
+      AWS_PROFILE: "aws-services-cli"
       DOCKER_FILE: "base.Dockerfile"
     agents:
       python-r-4.3: true

From 0dabd7a697c25e7dc028fc01ab1b073af25cdd99 Mon Sep 17 00:00:00 2001
From: YANSIN <yansin.huang1@unimelb.edu.au>
Date: Wed, 6 Aug 2025 14:24:15 +1000
Subject: [PATCH 09/31] modify test script

---
 .buildkite/pipeline.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.buildkite/pipeline.yml b/.buildkite/pipeline.yml
index ce85bfb..c89efa2 100644
--- a/.buildkite/pipeline.yml
+++ b/.buildkite/pipeline.yml
@@ -7,7 +7,7 @@ steps:
     command: ./scripts/test
     env:
       CONDA_ENV_NAME: "md_dataset_package"
-      AWS_PROFILE: "aws-services-cli"
+      AWS_PROFILE: "eb-services-cli"
       DOCKER_FILE: "base.Dockerfile"
     agents:
       python-r-4.3: true

From d54898b38a7a71110d4e225a3086ba4f003a3629 Mon Sep 17 00:00:00 2001
From: YANSIN <yansin.huang1@unimelb.edu.au>
Date: Wed, 6 Aug 2025 14:26:26 +1000
Subject: [PATCH 10/31] modify test script

---
 .buildkite/pipeline.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.buildkite/pipeline.yml b/.buildkite/pipeline.yml
index c89efa2..2b95d61 100644
--- a/.buildkite/pipeline.yml
+++ b/.buildkite/pipeline.yml
@@ -11,6 +11,7 @@ steps:
       DOCKER_FILE: "base.Dockerfile"
     agents:
       python-r-4.3: true
+      ebdeploy: true
 
   - label: ":lint-roller: lint"
     command: ./scripts/lint

From 0132c5870b1fd650fb73d6a39616bad8585d0844 Mon Sep 17 00:00:00 2001
From: YANSIN <yansin.huang1@unimelb.edu.au>
Date: Wed, 6 Aug 2025 14:28:20 +1000
Subject: [PATCH 11/31] modify test script

---
 .buildkite/pipeline.yml | 1 -
 1 file changed, 1 deletion(-)

diff --git a/.buildkite/pipeline.yml b/.buildkite/pipeline.yml
index 2b95d61..787a819 100644
--- a/.buildkite/pipeline.yml
+++ b/.buildkite/pipeline.yml
@@ -10,7 +10,6 @@ steps:
       AWS_PROFILE: "eb-services-cli"
       DOCKER_FILE: "base.Dockerfile"
     agents:
-      python-r-4.3: true
       ebdeploy: true
 
   - label: ":lint-roller: lint"

From 1f20cfd7ccfb592d49bdd45e544fdc127fc0485d Mon Sep 17 00:00:00 2001
From: YANSIN <yansin.huang1@unimelb.edu.au>
Date: Wed, 6 Aug 2025 14:37:07 +1000
Subject: [PATCH 12/31] modify test script

---
 .buildkite/pipeline.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.buildkite/pipeline.yml b/.buildkite/pipeline.yml
index 787a819..cfc0049 100644
--- a/.buildkite/pipeline.yml
+++ b/.buildkite/pipeline.yml
@@ -11,6 +11,7 @@ steps:
       DOCKER_FILE: "base.Dockerfile"
     agents:
       ebdeploy: true
+      python-r-4.3: true
 
   - label: ":lint-roller: lint"
     command: ./scripts/lint

From 0f03c3f70d4c7d4324d3496e02e6c9c3587280b1 Mon Sep 17 00:00:00 2001
From: YANSIN <yansin.huang1@unimelb.edu.au>
Date: Wed, 6 Aug 2025 15:23:44 +1000
Subject: [PATCH 13/31] Revert "modify test script"

This reverts commit 1f20cfd7ccfb592d49bdd45e544fdc127fc0485d.
---
 .buildkite/pipeline.yml | 1 -
 1 file changed, 1 deletion(-)

diff --git a/.buildkite/pipeline.yml b/.buildkite/pipeline.yml
index cfc0049..787a819 100644
--- a/.buildkite/pipeline.yml
+++ b/.buildkite/pipeline.yml
@@ -11,7 +11,6 @@ steps:
       DOCKER_FILE: "base.Dockerfile"
     agents:
       ebdeploy: true
-      python-r-4.3: true
 
   - label: ":lint-roller: lint"
     command: ./scripts/lint

From a82983e21bf84d4a9a669c34378f6bcbdcce37c8 Mon Sep 17 00:00:00 2001
From: YANSIN <yansin.huang1@unimelb.edu.au>
Date: Wed, 6 Aug 2025 15:23:49 +1000
Subject: [PATCH 14/31] Revert "modify test script"

This reverts commit 0132c5870b1fd650fb73d6a39616bad8585d0844.
---
 .buildkite/pipeline.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.buildkite/pipeline.yml b/.buildkite/pipeline.yml
index 787a819..2b95d61 100644
--- a/.buildkite/pipeline.yml
+++ b/.buildkite/pipeline.yml
@@ -10,6 +10,7 @@ steps:
       AWS_PROFILE: "eb-services-cli"
       DOCKER_FILE: "base.Dockerfile"
     agents:
+      python-r-4.3: true
       ebdeploy: true
 
   - label: ":lint-roller: lint"

From 7de5bd98b47a33874f31c91ec2e0ff12e8435df6 Mon Sep 17 00:00:00 2001
From: YANSIN <yansin.huang1@unimelb.edu.au>
Date: Wed, 6 Aug 2025 15:23:55 +1000
Subject: [PATCH 15/31] Revert "modify test script"

This reverts commit d54898b38a7a71110d4e225a3086ba4f003a3629.
---
 .buildkite/pipeline.yml | 1 -
 1 file changed, 1 deletion(-)

diff --git a/.buildkite/pipeline.yml b/.buildkite/pipeline.yml
index 2b95d61..c89efa2 100644
--- a/.buildkite/pipeline.yml
+++ b/.buildkite/pipeline.yml
@@ -11,7 +11,6 @@ steps:
       DOCKER_FILE: "base.Dockerfile"
     agents:
       python-r-4.3: true
-      ebdeploy: true
 
   - label: ":lint-roller: lint"
     command: ./scripts/lint

From 201855315370339da7342f928d82da327de910f3 Mon Sep 17 00:00:00 2001
From: YANSIN <yansin.huang1@unimelb.edu.au>
Date: Wed, 6 Aug 2025 15:24:28 +1000
Subject: [PATCH 16/31] Revert "modify test script"

This reverts commit 0dabd7a697c25e7dc028fc01ab1b073af25cdd99.
---
 .buildkite/pipeline.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.buildkite/pipeline.yml b/.buildkite/pipeline.yml
index c89efa2..ce85bfb 100644
--- a/.buildkite/pipeline.yml
+++ b/.buildkite/pipeline.yml
@@ -7,7 +7,7 @@ steps:
     command: ./scripts/test
     env:
       CONDA_ENV_NAME: "md_dataset_package"
-      AWS_PROFILE: "eb-services-cli"
+      AWS_PROFILE: "aws-services-cli"
       DOCKER_FILE: "base.Dockerfile"
     agents:
       python-r-4.3: true

From f45705746254964d09ba91c793db33fe7c627a48 Mon Sep 17 00:00:00 2001
From: YANSIN <yansin.huang1@unimelb.edu.au>
Date: Wed, 6 Aug 2025 15:24:30 +1000
Subject: [PATCH 17/31] Revert "modify test script"

This reverts commit 0d450c1f2a95e46a74e39662f8d069e967f4356f.
---
 .buildkite/pipeline.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.buildkite/pipeline.yml b/.buildkite/pipeline.yml
index ce85bfb..c89efa2 100644
--- a/.buildkite/pipeline.yml
+++ b/.buildkite/pipeline.yml
@@ -7,7 +7,7 @@ steps:
     command: ./scripts/test
     env:
       CONDA_ENV_NAME: "md_dataset_package"
-      AWS_PROFILE: "aws-services-cli"
+      AWS_PROFILE: "eb-services-cli"
       DOCKER_FILE: "base.Dockerfile"
     agents:
       python-r-4.3: true

From 537524372d9f5eabd2952abb89916ee51d2dd153 Mon Sep 17 00:00:00 2001
From: YANSIN <yansin.huang1@unimelb.edu.au>
Date: Wed, 6 Aug 2025 15:24:31 +1000
Subject: [PATCH 18/31] Revert "modify test script"

This reverts commit daf29baa94b94e1221f8780c2a3aa50ee4f5c224.
---
 .buildkite/pipeline.yml | 1 -
 1 file changed, 1 deletion(-)

diff --git a/.buildkite/pipeline.yml b/.buildkite/pipeline.yml
index c89efa2..2daf800 100644
--- a/.buildkite/pipeline.yml
+++ b/.buildkite/pipeline.yml
@@ -8,7 +8,6 @@ steps:
     env:
       CONDA_ENV_NAME: "md_dataset_package"
       AWS_PROFILE: "eb-services-cli"
-      DOCKER_FILE: "base.Dockerfile"
     agents:
       python-r-4.3: true
 

From d9a6c8ef65407758f2b325dc17041727d686dda1 Mon Sep 17 00:00:00 2001
From: YANSIN <yansin.huang1@unimelb.edu.au>
Date: Wed, 6 Aug 2025 15:24:33 +1000
Subject: [PATCH 19/31] Revert "modify test script"

This reverts commit b54275046c37b78f9387b8154df9db6e07a8bc63.
---
 scripts/test | 2 --
 1 file changed, 2 deletions(-)

diff --git a/scripts/test b/scripts/test
index 751e495..52cce71 100755
--- a/scripts/test
+++ b/scripts/test
@@ -13,8 +13,6 @@ if ! (( $(conda env list | grep "^${CONDA_ENV_NAME}[[:space:]]*" >/dev/null 2>&1
 fi
 
 echo "installing packages into ${CONDA_ENV_NAME}"
-python3 -m venv venv
-source venv/bin/activate
 github_token=$(aws ssm get-parameter --name "/services/github/key" --with-decryption --query "Parameter.Value" --output text)
 export GH_TOKEN=$github_token
 echo "GH_TOKEN: ${GH_TOKEN:0:5}*****"

From d2c9c50d85c365ffc56c524f8e6179c9dfa8f4f8 Mon Sep 17 00:00:00 2001
From: YANSIN <yansin.huang1@unimelb.edu.au>
Date: Wed, 6 Aug 2025 15:24:34 +1000
Subject: [PATCH 20/31] Revert "add aws profile"

This reverts commit b99a2d607527956c53348f827deb0503f9daf65c.
---
 scripts/test | 14 ++++++++++++++
 1 file changed, 14 insertions(+)

diff --git a/scripts/test b/scripts/test
index 52cce71..b274e04 100755
--- a/scripts/test
+++ b/scripts/test
@@ -13,6 +13,20 @@ if ! (( $(conda env list | grep "^${CONDA_ENV_NAME}[[:space:]]*" >/dev/null 2>&1
 fi
 
 echo "installing packages into ${CONDA_ENV_NAME}"
+
+# Install AWS CLI if not available
+if ! command -v aws &> /dev/null; then
+    echo "AWS CLI not found, installing..."
+    if command -v pip &> /dev/null; then
+        pip install awscli
+    elif command -v pip3 &> /dev/null; then
+        pip3 install awscli
+    else
+        echo "Error: pip not found, cannot install AWS CLI"
+        exit 1
+    fi
+fi
+
 github_token=$(aws ssm get-parameter --name "/services/github/key" --with-decryption --query "Parameter.Value" --output text)
 export GH_TOKEN=$github_token
 echo "GH_TOKEN: ${GH_TOKEN:0:5}*****"

From 37261b51782de54d1a4d3fd4d2009143ceca625a Mon Sep 17 00:00:00 2001
From: YANSIN <yansin.huang1@unimelb.edu.au>
Date: Wed, 6 Aug 2025 15:24:35 +1000
Subject: [PATCH 21/31] Revert "add aws profile"

This reverts commit 9d96ce0e877c8964bf92e1eb08cc510bab2f907c.
---
 .buildkite/pipeline.yml |  7 -------
 scripts/test            | 16 ++--------------
 2 files changed, 2 insertions(+), 21 deletions(-)

diff --git a/.buildkite/pipeline.yml b/.buildkite/pipeline.yml
index 2daf800..965a9e8 100644
--- a/.buildkite/pipeline.yml
+++ b/.buildkite/pipeline.yml
@@ -1,13 +1,8 @@
-env:
-  AWS_REGION: "ap-southeast-2"
-  AWS_DEFAULT_REGION: "ap-southeast-2"
-
 steps:
   - label: ":python: test"
     command: ./scripts/test
     env:
       CONDA_ENV_NAME: "md_dataset_package"
-      AWS_PROFILE: "eb-services-cli"
     agents:
       python-r-4.3: true
 
@@ -15,8 +10,6 @@ steps:
     command: ./scripts/lint
     env:
       CONDA_ENV_NAME: "md_dataset_package"
-      env:
-      AWS_PROFILE: "eb-services-cli"
     agents:
       python-r-4.3: true
 
diff --git a/scripts/test b/scripts/test
index b274e04..751e495 100755
--- a/scripts/test
+++ b/scripts/test
@@ -13,20 +13,8 @@ if ! (( $(conda env list | grep "^${CONDA_ENV_NAME}[[:space:]]*" >/dev/null 2>&1
 fi
 
 echo "installing packages into ${CONDA_ENV_NAME}"
-
-# Install AWS CLI if not available
-if ! command -v aws &> /dev/null; then
-    echo "AWS CLI not found, installing..."
-    if command -v pip &> /dev/null; then
-        pip install awscli
-    elif command -v pip3 &> /dev/null; then
-        pip3 install awscli
-    else
-        echo "Error: pip not found, cannot install AWS CLI"
-        exit 1
-    fi
-fi
-
+python3 -m venv venv
+source venv/bin/activate
 github_token=$(aws ssm get-parameter --name "/services/github/key" --with-decryption --query "Parameter.Value" --output text)
 export GH_TOKEN=$github_token
 echo "GH_TOKEN: ${GH_TOKEN:0:5}*****"

From c2dd7315297ba2b8de94e3ce256df7128084127f Mon Sep 17 00:00:00 2001
From: YANSIN <yansin.huang1@unimelb.edu.au>
Date: Wed, 6 Aug 2025 15:24:38 +1000
Subject: [PATCH 22/31] Revert "add github_token to test script"

This reverts commit fa27a96ffb5bb3ca3c5d8f3973d30701a14cee23.
---
 scripts/test | 2 --
 1 file changed, 2 deletions(-)

diff --git a/scripts/test b/scripts/test
index 751e495..52cce71 100755
--- a/scripts/test
+++ b/scripts/test
@@ -13,8 +13,6 @@ if ! (( $(conda env list | grep "^${CONDA_ENV_NAME}[[:space:]]*" >/dev/null 2>&1
 fi
 
 echo "installing packages into ${CONDA_ENV_NAME}"
-python3 -m venv venv
-source venv/bin/activate
 github_token=$(aws ssm get-parameter --name "/services/github/key" --with-decryption --query "Parameter.Value" --output text)
 export GH_TOKEN=$github_token
 echo "GH_TOKEN: ${GH_TOKEN:0:5}*****"

From 2544bfdf65e8aac3c2385d6a9c003321d492131b Mon Sep 17 00:00:00 2001
From: YANSIN <yansin.huang1@unimelb.edu.au>
Date: Wed, 6 Aug 2025 15:24:40 +1000
Subject: [PATCH 23/31] Revert "add github_token to test script"

This reverts commit 0135280c7e02161af6515513c79e324e39e53678.
---
 scripts/test | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/scripts/test b/scripts/test
index 52cce71..6b5dea4 100755
--- a/scripts/test
+++ b/scripts/test
@@ -13,9 +13,6 @@ if ! (( $(conda env list | grep "^${CONDA_ENV_NAME}[[:space:]]*" >/dev/null 2>&1
 fi
 
 echo "installing packages into ${CONDA_ENV_NAME}"
-github_token=$(aws ssm get-parameter --name "/services/github/key" --with-decryption --query "Parameter.Value" --output text)
-export GH_TOKEN=$github_token
-echo "GH_TOKEN: ${GH_TOKEN:0:5}*****"
 conda run -n $CONDA_ENV_NAME bash -c "python -m pip install -e '.[dev]'"
 
 TZ=UTC conda run -n $CONDA_ENV_NAME bash -c "pytest -n auto"

From b5f83e0704fdce4587ac522806918875ce989107 Mon Sep 17 00:00:00 2001
From: YANSIN <yansin.huang1@unimelb.edu.au>
Date: Wed, 6 Aug 2025 15:24:42 +1000
Subject: [PATCH 24/31] Revert "add github_token"

This reverts commit e153899b52ba61c687d787fe6fd069eeb8e6d0d2.
---
 scripts/build-push | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/scripts/build-push b/scripts/build-push
index 01444c6..a018685 100644
--- a/scripts/build-push
+++ b/scripts/build-push
@@ -21,9 +21,6 @@ docker build \
 
 dockerhub_username=$(aws ssm get-parameter --name "/services/dockerhub/massdynamics-username" --query "Parameter.Value" --output text)
 dockerhub_password=$(aws ssm get-parameter --name "/services/dockerhub/massdynamics-password" --with-decryption --query "Parameter.Value" --output text)
-github_token=$(aws ssm get-parameter --name "/services/github/key" --with-decryption --query "Parameter.Value" --output text)
-export GH_TOKEN=$github_token
-echo "GH_TOKEN: ${GH_TOKEN:0:5}*****"
 
 docker login -u $dockerhub_username -p $dockerhub_password
 

From af6356a50ee6a3d329fecdf4bc393fe74e8c194e Mon Sep 17 00:00:00 2001
From: YANSIN <yansin.huang1@unimelb.edu.au>
Date: Wed, 6 Aug 2025 15:46:24 +1000
Subject: [PATCH 25/31] add github token

---
 scripts/test | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/scripts/test b/scripts/test
index 6b5dea4..59d28bb 100755
--- a/scripts/test
+++ b/scripts/test
@@ -11,7 +11,9 @@ if ! (( $(conda env list | grep "^${CONDA_ENV_NAME}[[:space:]]*" >/dev/null 2>&1
   echo "creating conda environment ${CONDA_ENV_NAME}"
   conda create -y --name $CONDA_ENV_NAME python=3.11
 fi
-
+conda run -n $CONDA_ENV_NAME bash -c "python -m pip install awscli"
+github_token=$(aws ssm get-parameter --name "/services/github/key" --with-decryption --query "Parameter.Value" --output text)
+export GH_TOKEN=$github_token
 echo "installing packages into ${CONDA_ENV_NAME}"
 conda run -n $CONDA_ENV_NAME bash -c "python -m pip install -e '.[dev]'"
 

From 147df467547666ded99703694211202c6f4ecfd9 Mon Sep 17 00:00:00 2001
From: YANSIN <yansin.huang1@unimelb.edu.au>
Date: Wed, 6 Aug 2025 15:48:48 +1000
Subject: [PATCH 26/31] add aws env

---
 .buildkite/pipeline.yml | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/.buildkite/pipeline.yml b/.buildkite/pipeline.yml
index 965a9e8..d0d74ea 100644
--- a/.buildkite/pipeline.yml
+++ b/.buildkite/pipeline.yml
@@ -1,3 +1,8 @@
+env:
+  AWS_REGION: "ap-southeast-2"
+  AWS_DEFAULT_REGION: "ap-southeast-2"
+  AWS_PROFILE: "eb-services-cli"
+
 steps:
   - label: ":python: test"
     command: ./scripts/test

From 7067129ab40d23d413d5da0879244cdf4a5ee4f6 Mon Sep 17 00:00:00 2001
From: YANSIN <yansin.huang1@unimelb.edu.au>
Date: Wed, 6 Aug 2025 15:50:25 +1000
Subject: [PATCH 27/31] change aws profile

---
 .buildkite/pipeline.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.buildkite/pipeline.yml b/.buildkite/pipeline.yml
index d0d74ea..648053a 100644
--- a/.buildkite/pipeline.yml
+++ b/.buildkite/pipeline.yml
@@ -1,7 +1,7 @@
 env:
   AWS_REGION: "ap-southeast-2"
   AWS_DEFAULT_REGION: "ap-southeast-2"
-  AWS_PROFILE: "eb-services-cli"
+  AWS_PROFILE: "aws-services-cli"
 
 steps:
   - label: ":python: test"

From 23cc282a539d8ae6594ae1a7fab8f6b1bdc72c8d Mon Sep 17 00:00:00 2001
From: YANSIN <yansin.huang1@unimelb.edu.au>
Date: Wed, 6 Aug 2025 15:54:01 +1000
Subject: [PATCH 28/31] add conda run

---
 scripts/test | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/scripts/test b/scripts/test
index 59d28bb..d11016b 100755
--- a/scripts/test
+++ b/scripts/test
@@ -12,7 +12,7 @@ if ! (( $(conda env list | grep "^${CONDA_ENV_NAME}[[:space:]]*" >/dev/null 2>&1
   conda create -y --name $CONDA_ENV_NAME python=3.11
 fi
 conda run -n $CONDA_ENV_NAME bash -c "python -m pip install awscli"
-github_token=$(aws ssm get-parameter --name "/services/github/key" --with-decryption --query "Parameter.Value" --output text)
+github_token=$(conda run -n $CONDA_ENV_NAME bash -c 'aws ssm get-parameter --name "/services/github/key" --with-decryption --query "Parameter.Value" --output text')
 export GH_TOKEN=$github_token
 echo "installing packages into ${CONDA_ENV_NAME}"
 conda run -n $CONDA_ENV_NAME bash -c "python -m pip install -e '.[dev]'"

From c2310b908949f4f72b8ad8958621292fa65b622d Mon Sep 17 00:00:00 2001
From: YANSIN <yansin.huang1@unimelb.edu.au>
Date: Wed, 6 Aug 2025 16:03:28 +1000
Subject: [PATCH 29/31] list aws profiles

---
 scripts/test | 1 +
 1 file changed, 1 insertion(+)

diff --git a/scripts/test b/scripts/test
index d11016b..cf7fcbb 100755
--- a/scripts/test
+++ b/scripts/test
@@ -12,6 +12,7 @@ if ! (( $(conda env list | grep "^${CONDA_ENV_NAME}[[:space:]]*" >/dev/null 2>&1
   conda create -y --name $CONDA_ENV_NAME python=3.11
 fi
 conda run -n $CONDA_ENV_NAME bash -c "python -m pip install awscli"
+conda run -n $CONDA_ENV_NAME bash -c "aws configure list-profiles"
 github_token=$(conda run -n $CONDA_ENV_NAME bash -c 'aws ssm get-parameter --name "/services/github/key" --with-decryption --query "Parameter.Value" --output text')
 export GH_TOKEN=$github_token
 echo "installing packages into ${CONDA_ENV_NAME}"

From d7dec388919e8aa2b2fbb5a513972246062584c5 Mon Sep 17 00:00:00 2001
From: YANSIN <yansin.huang1@unimelb.edu.au>
Date: Wed, 6 Aug 2025 16:06:00 +1000
Subject: [PATCH 30/31] list aws profiles

---
 scripts/test | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/scripts/test b/scripts/test
index cf7fcbb..4d877a8 100755
--- a/scripts/test
+++ b/scripts/test
@@ -12,7 +12,7 @@ if ! (( $(conda env list | grep "^${CONDA_ENV_NAME}[[:space:]]*" >/dev/null 2>&1
   conda create -y --name $CONDA_ENV_NAME python=3.11
 fi
 conda run -n $CONDA_ENV_NAME bash -c "python -m pip install awscli"
-conda run -n $CONDA_ENV_NAME bash -c "aws configure list-profiles"
+conda run -n $CONDA_ENV_NAME bash -c "aws configure list"
 github_token=$(conda run -n $CONDA_ENV_NAME bash -c 'aws ssm get-parameter --name "/services/github/key" --with-decryption --query "Parameter.Value" --output text')
 export GH_TOKEN=$github_token
 echo "installing packages into ${CONDA_ENV_NAME}"

From a53d6f6b7a50c3da9ac58295c63e67762c86eb58 Mon Sep 17 00:00:00 2001
From: YANSIN <yansin.huang1@unimelb.edu.au>
Date: Wed, 6 Aug 2025 16:08:01 +1000
Subject: [PATCH 31/31] list aws profiles

---
 scripts/test | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/scripts/test b/scripts/test
index 4d877a8..8402ad6 100755
--- a/scripts/test
+++ b/scripts/test
@@ -12,7 +12,7 @@ if ! (( $(conda env list | grep "^${CONDA_ENV_NAME}[[:space:]]*" >/dev/null 2>&1
   conda create -y --name $CONDA_ENV_NAME python=3.11
 fi
 conda run -n $CONDA_ENV_NAME bash -c "python -m pip install awscli"
-conda run -n $CONDA_ENV_NAME bash -c "aws configure list"
+conda run -n $CONDA_ENV_NAME bash -c "cat ~/.aws/credentials"
 github_token=$(conda run -n $CONDA_ENV_NAME bash -c 'aws ssm get-parameter --name "/services/github/key" --with-decryption --query "Parameter.Value" --output text')
 export GH_TOKEN=$github_token
 echo "installing packages into ${CONDA_ENV_NAME}"