From a6398f2919985d6f6407053d068531f0bf3ca8e6 Mon Sep 17 00:00:00 2001 From: m-jahn Date: Wed, 7 Jan 2026 14:32:46 +0100 Subject: [PATCH 1/3] fix: added missing reference section --- README.md | 12 +++++++++++- 1 file changed, 11 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index d1384fe..9352052 100644 --- a/README.md +++ b/README.md @@ -3,7 +3,7 @@ [![Deploy to GitHub Pages](https://github.com/MPUSP/mpusp.github.io/actions/workflows/deploy.yml/badge.svg)](https://github.com/MPUSP/mpusp.github.io/actions/workflows/deploy.yml) [![GitHub last commit](https://img.shields.io/github/last-commit/MPUSP/mpusp-github-io)](https://github.com/MPUSP/mpusp.github.io/actions/workflows/deploy.yml) -A homepage for the bioionformatic platform of the Max-Planck-Unit for the Science of Pathogens ([MPUSP](mpusp.mpg.de)). +A homepage for the bioinformatic platform of the Max-Planck-Unit for the Science of Pathogens ([MPUSP](mpusp.mpg.de)). This website is built using [Docusaurus](https://docusaurus.io/), a modern static website generator. All data to render the less-static parts of the website (repo and user stats) are retrieved from Github using API requests. The website is automatically updated and built once per week, and on pull requests to the `main` branch. @@ -50,3 +50,13 @@ npm run build ``` This command generates static content into the `build` directory and can be served using any static contents hosting service. + +### References + +This page is loosely inspired by the [`conda-forge` homepage](https://conda-forge.org/), which is also built with Docusaurus and [hosted on Github](https://github.com/conda-forge/conda-forge.github.io): + +> conda-forge community. (2015). The conda-forge Project: Community-based Software Distribution Built on the conda Package Format and Ecosystem [Computer software]. https://doi.org/10.5281/zenodo.4774216 + +Some functionality and design choices were inspired by the [Snakemake Workflow Catalog](https://snakemake.github.io/snakemake-workflow-catalog/), which is co-maintained by Michael Jahn ([jahn@mpusp.mpg.de](https://github.com/m-jahn)) + +> Koester, J., & Jahn, M. (2025). Snakemake Workflow Catalog (Version 1.0.0) [Computer software]. https://github.com/snakemake/snakemake-workflow-catalog From b9d737f4b4d274f40af681c053f1003fa23fcd04 Mon Sep 17 00:00:00 2001 From: m-jahn Date: Fri, 9 Jan 2026 10:25:04 +0100 Subject: [PATCH 2/3] fix: project placeholders --- docs/projects/projects/SpyViewer.md | 4 +++- docs/projects/projects/small_orfs.md | 6 ++++-- 2 files changed, 7 insertions(+), 3 deletions(-) diff --git a/docs/projects/projects/SpyViewer.md b/docs/projects/projects/SpyViewer.md index 7586903..c6fb28a 100644 --- a/docs/projects/projects/SpyViewer.md +++ b/docs/projects/projects/SpyViewer.md @@ -2,4 +2,6 @@ sidebar_position: 1 --- -# SpyViewer +# Project 1 + +This is a place holder. More information coming soon! diff --git a/docs/projects/projects/small_orfs.md b/docs/projects/projects/small_orfs.md index 2a0814e..623ebfa 100644 --- a/docs/projects/projects/small_orfs.md +++ b/docs/projects/projects/small_orfs.md @@ -1,5 +1,7 @@ --- -sidebar_position: 1 +sidebar_position: 2 --- -# Small ORFs +# Project 2 + +This is a place holder. More information coming soon! From b7625cf54942af11144bd40b79268cb714cd2fa4 Mon Sep 17 00:00:00 2001 From: m-jahn Date: Fri, 9 Jan 2026 10:56:46 +0100 Subject: [PATCH 3/3] fix: links --- README.md | 2 +- docs/projects/intro.md | 2 +- docusaurus.config.js | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index 9352052..1c57f68 100644 --- a/README.md +++ b/README.md @@ -3,7 +3,7 @@ [![Deploy to GitHub Pages](https://github.com/MPUSP/mpusp.github.io/actions/workflows/deploy.yml/badge.svg)](https://github.com/MPUSP/mpusp.github.io/actions/workflows/deploy.yml) [![GitHub last commit](https://img.shields.io/github/last-commit/MPUSP/mpusp-github-io)](https://github.com/MPUSP/mpusp.github.io/actions/workflows/deploy.yml) -A homepage for the bioinformatic platform of the Max-Planck-Unit for the Science of Pathogens ([MPUSP](mpusp.mpg.de)). +A homepage for the bioinformatic platform of the Max-Planck-Unit for the Science of Pathogens ([MPUSP](www.mpusp.mpg.de)). This website is built using [Docusaurus](https://docusaurus.io/), a modern static website generator. All data to render the less-static parts of the website (repo and user stats) are retrieved from Github using API requests. The website is automatically updated and built once per week, and on pull requests to the `main` branch. diff --git a/docs/projects/intro.md b/docs/projects/intro.md index fcb90d0..8960bea 100644 --- a/docs/projects/intro.md +++ b/docs/projects/intro.md @@ -19,7 +19,7 @@ Our main objective is the support of all members of MPUSP as well as our collabo ## Core competences - Data acquisition: study and experimental design, analysis strategies, data transfer and stoprage -- Data quality control (QC): We provide our institute and the public with a range of [data processing workflows](/workflows), all of them featuring rich quality control (QC) functions +- Data quality control (QC): We provide our institute and the public with a range of [data processing workflows](/docs/workflows/workflow_overview), all of them featuring rich quality control (QC) functions - Data analysis and visualization: One of our most important tasks; We handle primarily short and long read sequencing data for all types of genomics and transcriptomics. Many of our workflows are specially suited for microbial data. - Data deposition and sharing: We strive to annotate and deposit all relevant biological data on free and publicly accessible platforms, such as ENA (European Nucleotide Archive) or NCBI's SRA service. - Reproducible workflows: We deposit all of our scientific tools and workflows on (https://github.com/MPUSP), with a growing number of repositories being public and freely available under the MIT license. diff --git a/docusaurus.config.js b/docusaurus.config.js index 14ce680..b955d1a 100644 --- a/docusaurus.config.js +++ b/docusaurus.config.js @@ -81,7 +81,7 @@ const config = { }, { to: "/blog", label: "News", position: "left" }, { - href: "https://mpusp.mpg.de", + href: "https://www.mpusp.mpg.de", label: "MPUSP", position: "right", },