track_linearization/pyproject.toml at master · LorenFrankLab/track_linearization · GitHub

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[build-system]
requires = ["hatchling", "hatch-vcs"]
build-backend = "hatchling.build"

[project]
name = "track_linearization"
description = "A python package to map 2D trajectories to 1D."
readme = "README.md"
requires-python = ">=3.10"
license = { file = "LICENSE" }
authors = [{ name = "Eric Denovellis", email = "eric.denovellis@ucsf.edu" }]
classifiers = [
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Programming Language :: Python :: 3.13",
    "License :: OSI Approved :: MIT License",
    "Operating System :: OS Independent",
    "Development Status :: 4 - Beta",
    "Intended Audience :: Science/Research",
    "Topic :: Scientific/Engineering",
]
dependencies = [
    "numpy>=1.24",
    "scipy>=1.10",
    "matplotlib>=3.7",
    "pandas>=2.0",
    "dask[array]>=2023.5.0",
    "networkx>=3.2.1",
]
dynamic = ["version"]

[project.urls]
"Homepage" = "https://github.com/LorenFrankLab/track_linearization"
"Bug Tracker" = "https://github.com/LorenFrankLab/track_linearization/issues"

[project.optional-dependencies]
test = ["black", "pytest", "pytest-cov", "jupyter", "nbconvert", "ruff", "mypy", "pandas-stubs"]
opt = ["numba", "ipympl"]
dev = [
    "black",
    "pytest",
    "pytest-cov",
    "jupyter",
    "nbconvert",
    "ruff",
    "mypy",
    "pandas-stubs",
    "pre-commit",
]

[tool.hatch.version]
source = "vcs"

[tool.hatch.build.hooks.vcs]
version-file = "src/track_linearization/_version.py"

[tool.hatch.build.targets.sdist]
exclude = [".git_archival.txt"]

[tool.hatch.build.targets.wheel]
packages = ["src/track_linearization"]

[tool.ruff]
target-version = "py310"
line-length = 88
src = ["src"]

[tool.ruff.lint]
select = [
    "E",   # pycodestyle errors
    "W",   # pycodestyle warnings
    "F",   # pyflakes
    "I",   # isort
    "B",   # flake8-bugbear
    "C4",  # flake8-comprehensions
    "UP",  # pyupgrade
    "NPY", # numpy-specific rules
    "PD",  # pandas-vet
    "RUF", # ruff-specific rules
]
ignore = [
    "E501",   # line too long, handled by black
]

[tool.ruff.lint.per-file-ignores]
"__init__.py" = ["F401"]    # Ignore unused imports in __init__.py

[tool.ruff.lint.isort]
known-first-party = ["track_linearization"]
force-single-line = false
lines-after-imports = 2

[tool.mypy]
python_version = "3.10"
warn_return_any = true
warn_unused_configs = true
disallow_untyped_defs = true
disallow_incomplete_defs = true
check_untyped_defs = true
disallow_untyped_decorators = true
no_implicit_optional = true
warn_redundant_casts = true
warn_unused_ignores = true
warn_no_return = true
warn_unreachable = true
strict_equality = true
files = ["src/track_linearization"]
exclude = ["build", "dist", ".venv", ".eggs"]

# Ignore missing imports for packages without type stubs
[[tool.mypy.overrides]]
module = [
    "networkx.*",
    "scipy.*",
    "matplotlib.*",
    "dask.*",
    "numba.*",
]
ignore_missing_imports = true

# Less strict checking for tests
[[tool.mypy.overrides]]
module = "track_linearization.tests.*"
disallow_untyped_defs = false
disallow_incomplete_defs = false
disallow_untyped_decorators = false

[tool.pytest.ini_options]
testpaths = ["src/track_linearization/tests"]
python_files = ["test_*.py"]
python_classes = ["Test*"]
python_functions = ["test_*"]
addopts = [
    "--doctest-modules",
    "--cov=track_linearization",
    "--cov-report=html",
    "--cov-report=term-missing",
]