Genome Classifier Performance Evaluator is a tool for evaluating and comparing the performance of various genome classifiers when processing sequencing data, such as kraken2, CLARK, MegaBlast, and k-SLAM.
This tool calculates the total running time and total memory usage of each classifier through multiple repeated experiments to help users select the most suitable classifier for genome data analysis.
In subsequent updates, the functionality for analyzing the accuracy and AUPR (Area Under Precision-Recall Curve) of each classifier will be added to provide users with a more comprehensive evaluation and comparison of classifier performance.
- Evaluate and compare the performance of various genome classifiers
- Calculate total running time and memory usage of each classifier
- Upcoming: Analyze the accuracy and AUPR of each classifier for a comprehensive evaluation
You can download the dataset used for this project from the following link: Genome Classifier Dataset.
- Clone the repository
- Install dependencies (if any)
- Follow the usage instructions in the documentation
For detailed information on how to use Genome Classifier Performance Evaluator, please refer to the documentation.
This project is licensed under the MIT License.
Contributions, issues, and feature requests are welcome. Feel free to check the issues page or submit a pull request.
If you have any questions, please feel free to contact the author or raise an issue on the repository.