Hi！I'm always frustrated whether scprep.utils.combine_batches could remove batch effects？
EBT_counts, sample_labels = scprep.utils.combine_batches( filtered_batches, ["Day 00-03", "Day 06-09", "Day 12-15", "Day 18-21", "Day 24-27"], append_to_cell_names=True ) del filtered_batches # removes objects from memory EBT_counts.head()
does it mean combine_batches could remove batch effects in EBT data？Thanks！！did you write a whole post about how to correct them?Thanks again!
Hi！I'm always frustrated whether scprep.utils.combine_batches could remove batch effects？
EBT_counts, sample_labels = scprep.utils.combine_batches( filtered_batches, ["Day 00-03", "Day 06-09", "Day 12-15", "Day 18-21", "Day 24-27"], append_to_cell_names=True ) del filtered_batches # removes objects from memory EBT_counts.head()does it mean combine_batches could remove batch effects in EBT data？Thanks！！did you write a whole post about how to correct them?Thanks again!