On two consecutive occasions, I've had fixNoFishNodes() write out a JAGS file which attempts to set the parameter phi_SC2[1] twice. The error is below and occurs when I initiate the model run (apologies, I had to screen capture from another machine). My code chunk is as follows:
fixNoFishNodes(init_file = init_mod_file,
file_name = final_mod_file,
filter_ch = filter_ch,
parent_child = parent_child,
configuration = configuration,
fish_origin = origin_df)
The script containing this code chunk is within the NPTFisheries/SnakeRiverFishStatus repo at "scripts/05_dabom.R". The init_mod_file is at "model_files/lgr_dabom_jags.txt" and the parent_child and configuration objects are located within "data/configuration_files/site_config_LGR_20231117.rda". So far this has occurred for SY2010 and SY2011 Chinook salmon.
This is of low priority as its easy enough for me to just go modify those parameters by hand before initiating the DABOM model run. Just noting it for now.
On two consecutive occasions, I've had
fixNoFishNodes()write out a JAGS file which attempts to set the parameterphi_SC2[1]twice. The error is below and occurs when I initiate the model run (apologies, I had to screen capture from another machine). My code chunk is as follows:The script containing this code chunk is within the NPTFisheries/SnakeRiverFishStatus repo at "scripts/05_dabom.R". The
init_mod_fileis at "model_files/lgr_dabom_jags.txt" and theparent_childandconfigurationobjects are located within "data/configuration_files/site_config_LGR_20231117.rda". So far this has occurred for SY2010 and SY2011 Chinook salmon.This is of low priority as its easy enough for me to just go modify those parameters by hand before initiating the DABOM model run. Just noting it for now.